RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 MAP2K7O14733 419 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 SMC1AQ14683 1233 aaKnown RBP16.05■□□□□ 0.16
LIG1-202ENST00000427526 LONRF2Q1L5Z9 754 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 KIF4BQ2VIQ3 1234 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 MSANTD4Q8NCY6 345 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 ZNF507Q8TCN5 953 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 CCSER1Q9C0I3 900 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.05■□□□□ 0.16
LIG1-202ENST00000427526 ROBO3Q96MS0 1386 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 PP2D1A8MPX8 630 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 MYL1P05976 194 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 GNAQP50148 359 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 TUBB4BP68371 445 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 MB21D1Q8N884 522 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 CHP1Q99653 195 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 TCP11L1Q9NUJ3 509 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 REXO2Q9Y3B8 237 aaKnown RBP16.05■□□□□ 0.16
LIG1-202ENST00000427526 CCDC194A0A1B0GVG4 234 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 SEMA3FQ13275 785 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 GALNT17Q6IS24 598 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 GPR75-ASB3A0A0A6YYF3 556 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 A0A1W2PQC6 194 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 TTC26A0AVF1 554 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 POLR3GO15318 223 aaPredicted RBP16.04■□□□□ 0.16
LIG1-202ENST00000427526 RHOBTB3O94955 611 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 NPR1P16066 1061 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 GIMAP8Q8ND71 665 aaPredicted RBP16.04■□□□□ 0.16
LIG1-202ENST00000427526 LRRC15Q8TF66 581 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 NAPGQ99747 312 aaPredicted RBP16.04■□□□□ 0.16
LIG1-202ENST00000427526 SLF1Q9BQI6 1058 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 ZCCHC17Q9NP64 241 aaKnown RBP16.04■□□□□ 0.16
LIG1-202ENST00000427526 BARHL2Q9NY43 387 aa16.04■□□□□ 0.16
LIG1-202ENST00000427526 USP17L3A6NCW0 530 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 USP17L4A6NCW7 530 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 LGALS16A8MUM7 142 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 STXBP3O00186 592 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 HMGB2P26583 209 aaKnown RBP16.03■□□□□ 0.16
LIG1-202ENST00000427526 EEF1GP26641 437 aaKnown RBP16.03■□□□□ 0.16
LIG1-202ENST00000427526 OAS2P29728 719 aaKnown RBP16.03■□□□□ 0.16
LIG1-202ENST00000427526 USP17L1Q7RTZ2 530 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 DNAJC7Q99615 494 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 THAP9Q9H5L6 903 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 MKNK2Q9HBH9 465 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 EPN1Q9Y6I3 576 aaPredicted RBP16.03■□□□□ 0.16
LIG1-202ENST00000427526 LAD1O00515 517 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 TFRCP02786 760 aaKnown RBP16.03■□□□□ 0.16
LIG1-202ENST00000427526 PRPHP41219 470 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 AMPD2Q01433 879 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 DOK7Q18PE1 504 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 INF2Q27J81 1249 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 BEND6Q5SZJ8 279 aaPredicted RBP16.03■□□□□ 0.16
LIG1-202ENST00000427526 TMC4Q7Z404 712 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 OR8K1Q8NGG5 319 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 PNKPQ96T60 521 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 MXD3Q9BW11 206 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 PALM3A6NDB9 673 aaPredicted RBP16.03■□□□□ 0.16
LIG1-202ENST00000427526 F8W031 263 aaPredicted RBP16.03■□□□□ 0.16
LIG1-202ENST00000427526 NDUFA10O95299 355 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 CCDC178Q5BJE1 867 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 TEX11Q8IYF3 940 aa16.03■□□□□ 0.16
LIG1-202ENST00000427526 CCDC66A2RUB6 948 aa16.02■□□□□ 0.16
LIG1-202ENST00000427526 POTEB2H3BUK9 544 aa16.02■□□□□ 0.16
LIG1-202ENST00000427526 UBA7P41226 1012 aa16.02■□□□□ 0.16
LIG1-202ENST00000427526 WHAMMP3Q1A5X7 153 aa16.02■□□□□ 0.16
LIG1-202ENST00000427526 TTI2Q6NXR4 508 aa16.02■□□□□ 0.16
LIG1-202ENST00000427526 CCDC148Q8NFR7 591 aa16.02■□□□□ 0.16
LIG1-202ENST00000427526 ZC3H12CQ9C0D7 883 aaKnown RBP16.02■□□□□ 0.16
LIG1-202ENST00000427526 CAPN11Q9UMQ6 739 aa16.02■□□□□ 0.16
LIG1-202ENST00000427526 PDE6BP35913 854 aa16.02■□□□□ 0.15
LIG1-202ENST00000427526 RHBDL3P58872 404 aa16.02■□□□□ 0.15
LIG1-202ENST00000427526 WDR59Q6PJI9 974 aa16.02■□□□□ 0.15
LIG1-202ENST00000427526 FLAD1Q8NFF5 587 aa16.02■□□□□ 0.15
LIG1-202ENST00000427526 ZNF622Q969S3 477 aaKnown RBP eCLIP16.02■□□□□ 0.157e-7■■□□□ 12.2
LIG1-202ENST00000427526 ANKRD31Q8N7Z5 1873 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 ERICH4A6NGS2 130 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 TBC1D22AQ8WUA7 517 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 FLT1P17948 1338 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 TSPY3P0CV98 308 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 TSPY8P0CW00 308 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 ALDH1B1P30837 517 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 DPP8Q6V1X1 898 aaPredicted RBP16.01■□□□□ 0.15
LIG1-202ENST00000427526 HEATR3Q7Z4Q2 680 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 AMOTL1Q8IY63 956 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 CERS5Q8N5B7 392 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 DUSP9Q99956 384 aaKnown RBP16.01■□□□□ 0.15
LIG1-202ENST00000427526 TMEM47Q9BQJ4 181 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 COA1Q9GZY4 146 aa16.01■□□□□ 0.15
LIG1-202ENST00000427526 LUC7L2Q9Y383 392 aaKnown RBP16.01■□□□□ 0.15
LIG1-202ENST00000427526 FAM163AQ96GL9 167 aaPredicted RBP16■□□□□ 0.15
LIG1-202ENST00000427526 ZMYND12Q9H0C1 365 aa16■□□□□ 0.15
LIG1-202ENST00000427526 PSMA7O14818 248 aa16■□□□□ 0.15
LIG1-202ENST00000427526 ZNF444Q8N0Y2 327 aaPredicted RBP16■□□□□ 0.15
LIG1-202ENST00000427526 MSL3Q8N5Y2 521 aaKnown RBP16■□□□□ 0.15
LIG1-202ENST00000427526 MASTLQ96GX5 879 aa16■□□□□ 0.15
LIG1-202ENST00000427526 DHTKD1Q96HY7 919 aaPredicted RBP16■□□□□ 0.15
LIG1-202ENST00000427526 PLIN2Q99541 437 aa16■□□□□ 0.15
LIG1-202ENST00000427526 CUEDC2Q9H467 287 aa16■□□□□ 0.15
LIG1-202ENST00000427526 MYO6Q9UM54 1294 aa16■□□□□ 0.15
LIG1-202ENST00000427526 L1RE1Q9UN81 338 aa16■□□□□ 0.15
LIG1-202ENST00000427526 STIM1Q13586 685 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms