RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 PLEKHM2Q8IWE5 1019 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 MTMR10Q9NXD2 777 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 CYP39A1Q9NYL5 469 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 STXBP5LQ9Y2K9 1186 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 A0A0U1RQG5 324 aaPredicted RBP13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 SOWAHBA6NEL2 793 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 HIP1O00291 1037 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 RAG1P15918 1043 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 SNAP25P60880 206 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 NKX3-2P78367 333 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 NSMFQ6X4W1 530 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 ESR2Q92731 530 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 TTC14Q96N46 770 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 DIAPH3Q9NSV4 1193 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 TMEM39AQ9NV64 488 aa13.6□□□□□ -0.23
SQSTM1-203ENST00000422245 IGHDP01880 384 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 ASGR1P07306 291 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 PDHBP11177 359 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 SLC16A2P36021 539 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 TNFAIP2Q03169 654 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 SHHQ15465 462 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 MUM1L1Q5H9M0 696 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 GNASQ5JWF2 1037 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 C9orf50Q5SZB4 431 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 TTBK2Q6IQ55 1244 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 NOL8Q76FK4 1167 aaKnown RBP13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 EXOC6Q8TAG9 804 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 ASTN1O14525 1302 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 NEDD4P46934 1319 aa13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 FRMPD2Q68DX3 1309 aaPredicted RBP13.59□□□□□ -0.23
SQSTM1-203ENST00000422245 LCTP09848 1927 aa13.58□□□□□ -0.23
SQSTM1-203ENST00000422245 LOC102724159A0A0B4J2E5 919 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 CTAGE5O15320 804 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 CABYRO75952 493 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 SNHG28P0DPA3 235 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 ITGB8P26012 769 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 FPGSQ05932 587 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 ZNF543Q08ER8 600 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 FAAP100Q0VG06 881 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 PWP2Q15269 919 aaKnown RBP13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 CCDC178Q5BJE1 867 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 ZNF697Q5TEC3 545 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 TLK2Q86UE8 772 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 SLC17A8Q8NDX2 589 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 MORC4Q8TE76 937 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 VTA1Q9NP79 307 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 GPCPD1Q9NPB8 672 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 ADD3Q9UEY8 706 aaKnown RBP13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 TBX21Q9UL17 535 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 GNEQ9Y223 722 aaKnown RBP13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 WDR19Q8NEZ3 1342 aa13.58□□□□□ -0.24
SQSTM1-203ENST00000422245 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 ARVCFO00192 962 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 NFIBO00712 420 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 ZNF213O14771 459 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 ZEB2O60315 1214 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 IRX5P78411 483 aaPredicted RBP13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 SMAD3P84022 425 aaKnown RBP13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 FSCN1Q16658 493 aaKnown RBP13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 GPATCH4Q5T3I0 446 aaKnown RBP13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 CWC27Q6UX04 472 aaKnown RBP13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 IQCA1Q86XH1 822 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 DGKHQ86XP1 1220 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 FBXO16Q8IX29 292 aaPredicted RBP13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 VTI1AQ96AJ9 217 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 RNPC3Q96LT9 517 aaKnown RBP13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 DSCC1Q9BVC3 393 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 AP5M1Q9H0R1 490 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 Q9Y3F1 56 aa13.57□□□□□ -0.24
SQSTM1-203ENST00000422245 TLR3O15455 904 aaKnown RBP13.56□□□□□ -0.24
SQSTM1-203ENST00000422245 TIMP1P01033 207 aa13.56□□□□□ -0.24
SQSTM1-203ENST00000422245 SMPD1P17405 629 aa13.56□□□□□ -0.24
SQSTM1-203ENST00000422245 CDK7P50613 346 aa13.56□□□□□ -0.24
SQSTM1-203ENST00000422245 ALDH5A1P51649 535 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-203ENST00000422245 BAATQ14032 418 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-203ENST00000422245 IQSEC1Q6DN90 963 aa13.56□□□□□ -0.24
SQSTM1-203ENST00000422245 MPHOSPH6Q99547 160 aaKnown RBP13.56□□□□□ -0.24
SQSTM1-203ENST00000422245 SEZ6LQ9BYH1 1024 aa13.56□□□□□ -0.24
SQSTM1-203ENST00000422245 PTPDC1A2A3K4 754 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 KDM4AO75164 1064 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 EPHB4P54760 987 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 BEX3Q00994 111 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 IMMTQ16891 758 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 TAPT1Q6NXT6 567 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 SLC30A10Q6XR72 485 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 EEPD1Q7L9B9 569 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 FAM126BQ8IXS8 530 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 CLEC4DQ8WXI8 215 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 GUCD1Q96NT3 240 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 CTNNA3Q9UI47 895 aa13.55□□□□□ -0.24
SQSTM1-203ENST00000422245 COL6A3P12111 3177 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 TMEM265A0A087WTH1 108 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 DYNC1LI2O43237 492 aaPredicted RBP13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 PPIGQ13427 754 aaKnown RBP eCLIP13.54□□□□□ -0.249e-12■■□□□ 13.5
SQSTM1-203ENST00000422245 DUSP28Q4G0W2 176 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 MFSD5Q6N075 450 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 CXCL17Q6UXB2 119 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 RNF207Q6ZRF8 634 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 SLC43A3Q8NBI5 491 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 PNMA1Q8ND90 353 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms