RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 RASGRP4Q8TDF6 673 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 WNK4Q96J92 1243 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 USP28Q96RU2 1077 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 HOXC10Q9NYD6 342 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 PCDHA6Q9UN73 950 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 PCDHA8Q9Y5H6 950 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 HUNKP57058 714 aa19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 NONOQ15233 471 aaKnown RBP eCLIP19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 MCTP2Q6DN12 878 aa19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 CPXCR1Q8N123 301 aa19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 TMEM87AQ8NBN3 555 aa19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 LEO1Q8WVC0 666 aaPredicted RBP19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 ATG4CQ96DT6 458 aa19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 SLC38A10Q9HBR0 1119 aa19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 POLR3EQ9NVU0 708 aa19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 RTEL1Q9NZ71 1219 aa19.58■□□□□ 0.72
CCDC28B-202ENST00000421922 COL11A1P12107 1806 aaPredicted RBP19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 RBBP6Q7Z6E9 1792 aaKnown RBP19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 ELP1O95163 1332 aa19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 YEATS4O95619 227 aa19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 HSPA1AP0DMV8 641 aaKnown RBP19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 HSPA1BP0DMV9 641 aaKnown RBP19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 DSG3P32926 999 aa19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 TRAPPC10P48553 1259 aa19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 GTF2A2P52657 109 aa19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 JAKMIP3Q5VZ66 844 aa19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 KCNG4Q8TDN1 519 aa19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 TNFRSF25Q93038 417 aa19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 BIN2Q9UBW5 565 aaPredicted RBP19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 AGTPBP1Q9UPW5 1226 aa19.57■□□□□ 0.72
CCDC28B-202ENST00000421922 VWA5AO00534 786 aa19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 BMP15O95972 392 aa19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 OSBPP22059 807 aa19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 SKOR2Q2VWA4 1001 aaPredicted RBP19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 TTC38Q5R3I4 469 aa19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 TREML2Q5T2D2 321 aa19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 FTOQ9C0B1 505 aaKnown RBP eCLIP19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 RAVER2Q9HCJ3 691 aaKnown RBP19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 LMBRD1Q9NUN5 540 aa19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 CLIC4Q9Y696 253 aa19.56■□□□□ 0.72
CCDC28B-202ENST00000421922 RLFQ13129 1914 aa19.55■□□□□ 0.72
CCDC28B-202ENST00000421922 CETPP11597 493 aa19.55■□□□□ 0.72
CCDC28B-202ENST00000421922 ALAS1P13196 640 aa19.55■□□□□ 0.72
CCDC28B-202ENST00000421922 NASPP49321 788 aaPredicted RBP19.55■□□□□ 0.72
CCDC28B-202ENST00000421922 UBE2SQ16763 222 aa19.55■□□□□ 0.72
CCDC28B-202ENST00000421922 TPRNQ4KMQ1 711 aa19.55■□□□□ 0.72
CCDC28B-202ENST00000421922 TEX2Q8IWB9 1127 aa19.55■□□□□ 0.72
CCDC28B-202ENST00000421922 FAM205CA6NFA0 338 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 SPDYE3A6NKU9 549 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 M0R2N6 131 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 SPTLC2O15270 562 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 MBD3O95983 291 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 ZBTB48P10074 688 aaPredicted RBP19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 ME1P48163 572 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 OAZ1P54368 228 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 UBE2HP62256 183 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 MKRN3Q13064 507 aaKnown RBP19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 AP3B2Q13367 1082 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 CST9Q5W186 159 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 MCF2L2Q86YR7 1114 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 AGBL1Q96MI9 1066 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 EHMT1Q9H9B1 1298 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 TMEM260Q9NX78 707 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 RCOR1Q9UKL0 485 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 PNMA3Q9UL41 463 aa19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 DDX49Q9Y6V7 483 aaKnown RBP19.54■□□□□ 0.72
CCDC28B-202ENST00000421922 GCOM1H8Y6P7 765 aaPredicted RBP19.53■□□□□ 0.72
CCDC28B-202ENST00000421922 FOSP01100 380 aaPredicted RBP19.53■□□□□ 0.72
CCDC28B-202ENST00000421922 POLR2MP0CAP2 368 aa19.53■□□□□ 0.72
CCDC28B-202ENST00000421922 HOXA7P31268 230 aaPredicted RBP19.53■□□□□ 0.72
CCDC28B-202ENST00000421922 GJA5P36382 358 aa19.53■□□□□ 0.72
CCDC28B-202ENST00000421922 INF2Q27J81 1249 aa19.53■□□□□ 0.72
CCDC28B-202ENST00000421922 EARS2Q5JPH6 523 aaKnown RBP19.53■□□□□ 0.72
CCDC28B-202ENST00000421922 MB21D1Q8N884 522 aa19.53■□□□□ 0.72
CCDC28B-202ENST00000421922 CCL15-CCL14A0A0B4J2E2 113 aa19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 SPDYE16A6NNV3 312 aaPredicted RBP19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 CFBP00751 764 aa19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 TAL1P17542 331 aaPredicted RBP19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 ZNF157P51786 506 aaPredicted RBP19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 PLS1Q14651 629 aa19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 CCL15Q16663 113 aa19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 SNRNP48Q6IEG0 339 aaKnown RBP19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 NEK8Q86SG6 692 aa19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 LINC00301Q8NCQ3 95 aa19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 HOMER2Q9NSB8 354 aa19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 ZNF536O15090 1300 aa19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 PASKQ96RG2 1323 aa19.52■□□□□ 0.72
CCDC28B-202ENST00000421922 SMCHD1A6NHR9 2005 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 ADAMTS3O15072 1205 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 TRAK2O60296 914 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 TOB1P50616 345 aaPredicted RBP19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 SLC39A14Q15043 492 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 NOM1Q5C9Z4 860 aaKnown RBP19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 SPRYD7Q5W111 196 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 USP17L6PQ6QN14 398 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 TBCKQ8TEA7 893 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 PGBD1Q96JS3 809 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 NAP1L4Q99733 375 aaKnown RBP19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 TEX13BQ9BXU2 312 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 ASCC2Q9H1I8 757 aaPredicted RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms