RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TBC1D10CQ8IV04 446 aa13.67□□□□□ -0.22
USP4-204ENST00000416417 FBXO16Q8IX29 292 aaPredicted RBP13.67□□□□□ -0.22
USP4-204ENST00000416417 RNPC3Q96LT9 517 aaKnown RBP13.67□□□□□ -0.22
USP4-204ENST00000416417 GLT1D1Q96MS3 346 aa13.67□□□□□ -0.22
USP4-204ENST00000416417 TTYH1Q9H313 450 aaPredicted RBP13.67□□□□□ -0.22
USP4-204ENST00000416417 CYP39A1Q9NYL5 469 aa13.67□□□□□ -0.22
USP4-204ENST00000416417 A0A0C4DFX4 3053 aa13.67□□□□□ -0.22
USP4-204ENST00000416417 FDX1P10109 184 aa13.66□□□□□ -0.22
USP4-204ENST00000416417 CST5P28325 142 aaPredicted RBP13.66□□□□□ -0.22
USP4-204ENST00000416417 NOVP48745 357 aa13.66□□□□□ -0.22
USP4-204ENST00000416417 FPGSQ05932 587 aa13.66□□□□□ -0.22
USP4-204ENST00000416417 CXCL17Q6UXB2 119 aa13.66□□□□□ -0.22
USP4-204ENST00000416417 CDX2Q99626 313 aaPredicted RBP13.66□□□□□ -0.22
USP4-204ENST00000416417 ZKSCAN3Q9BRR0 538 aa13.66□□□□□ -0.22
USP4-204ENST00000416417 PPP1R12CQ9BZL4 782 aa13.66□□□□□ -0.22
USP4-204ENST00000416417 SEMA6BQ9H3T3 888 aa13.66□□□□□ -0.22
USP4-204ENST00000416417 SPC25Q9HBM1 224 aa13.66□□□□□ -0.22
USP4-204ENST00000416417 NFIBO00712 420 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 DYNC1LI2O43237 492 aaPredicted RBP13.65□□□□□ -0.22
USP4-204ENST00000416417 PLA2G6O60733 806 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 FGRP09769 529 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 SMPD1P17405 629 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 CDK7P50613 346 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 BAATQ14032 418 aaPredicted RBP13.65□□□□□ -0.22
USP4-204ENST00000416417 TKFCQ3LXA3 575 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 SYDE2Q5VT97 1194 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 PCSK9Q8NBP7 692 aaKnown RBP13.65□□□□□ -0.22
USP4-204ENST00000416417 EXOC6Q8TAG9 804 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 DCAF4Q8WV16 495 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 MYLIPQ8WY64 445 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 TOX2Q96NM4 488 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 RANBP17Q9H2T7 1088 aaKnown RBP13.65□□□□□ -0.22
USP4-204ENST00000416417 CPVLQ9H3G5 476 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 TBX21Q9UL17 535 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 CCDC171Q6TFL3 1326 aa13.65□□□□□ -0.22
USP4-204ENST00000416417 A0A0U1RQG5 324 aaPredicted RBP13.64□□□□□ -0.23
USP4-204ENST00000416417 ASB14A6NK59 587 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 ARVCFO00192 962 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 ELP1O95163 1332 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 TIMP1P01033 207 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 ICAM1P05362 532 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 ACRP10323 421 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 TOP1P11387 765 aaKnown RBP13.64□□□□□ -0.23
USP4-204ENST00000416417 NEDD4P46934 1319 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 PSMC6P62333 389 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 PPP4R3BQ5MIZ7 849 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 TAPT1Q6NXT6 567 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 TLK2Q86UE8 772 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.64□□□□□ -0.23
USP4-204ENST00000416417 GNEQ9Y223 722 aaKnown RBP13.64□□□□□ -0.23
USP4-204ENST00000416417 LRRC37A2A6NM11 1700 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 EYSQ5T1H1 3165 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 UMODL1Q5DID0 1318 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 PTPDC1A2A3K4 754 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 GOLGA8HP0CJ92 632 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 CSF2RAP15509 400 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 SDSP20132 328 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 CYP2C18P33260 490 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 SMAD3P84022 425 aaKnown RBP13.64□□□□□ -0.23
USP4-204ENST00000416417 SLC30A10Q6XR72 485 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 C16orf59Q7L2K0 433 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 PLEKHM2Q8IWE5 1019 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 FAM126BQ8IXS8 530 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 PPP1R13LQ8WUF5 828 aa13.64□□□□□ -0.23
USP4-204ENST00000416417 GRIN2DO15399 1336 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 LCTP09848 1927 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 GRXCR1A8MXD5 290 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 PDHBP11177 359 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 CALML3P27482 149 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 FSCN1Q16658 493 aaKnown RBP13.63□□□□□ -0.23
USP4-204ENST00000416417 AKNAD1Q5T1N1 836 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 CWC27Q6UX04 472 aaKnown RBP13.63□□□□□ -0.23
USP4-204ENST00000416417 BTNL9Q6UXG8 535 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 MFSD6Q6ZSS7 791 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 KIAA1211Q6ZU35 1233 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 CHD1LQ86WJ1 897 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 SMC5Q8IY18 1101 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 AP5M1Q9H0R1 490 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 UNC80Q8N2C7 3258 aa13.63□□□□□ -0.23
USP4-204ENST00000416417 ALDH5A1P51649 535 aaPredicted RBP13.62□□□□□ -0.23
USP4-204ENST00000416417 ZNF543Q08ER8 600 aa13.62□□□□□ -0.23
USP4-204ENST00000416417 MFSD5Q6N075 450 aa13.62□□□□□ -0.23
USP4-204ENST00000416417 CLEC4DQ8WXI8 215 aa13.62□□□□□ -0.23
USP4-204ENST00000416417 UBA5Q9GZZ9 404 aa13.62□□□□□ -0.23
USP4-204ENST00000416417 TRPV6Q9H1D0 765 aa13.62□□□□□ -0.23
USP4-204ENST00000416417 RWDD1Q9H446 243 aaPredicted RBP13.62□□□□□ -0.23
USP4-204ENST00000416417 TCP11L1Q9NUJ3 509 aa13.62□□□□□ -0.23
USP4-204ENST00000416417 NUCB1Q02818 461 aa13.61□□□□□ -0.23
USP4-204ENST00000416417 ITGA7Q13683 1181 aa13.61□□□□□ -0.23
USP4-204ENST00000416417 USH1GQ495M9 461 aa13.61□□□□□ -0.23
USP4-204ENST00000416417 TMEM240Q5SV17 173 aa13.61□□□□□ -0.23
USP4-204ENST00000416417 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.61□□□□□ -0.23
USP4-204ENST00000416417 MROH7Q68CQ1 1323 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 RBAK-RBAKDNI3L0D1 243 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 TLR3O15455 904 aaKnown RBP13.6□□□□□ -0.23
USP4-204ENST00000416417 CD4P01730 458 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 DNAJB2P25686 324 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 PBX2P40425 430 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 CCL23P55773 120 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 NKX3-2P78367 333 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms