RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CLIC6Q96NY7 704 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 PTPN22Q9Y2R2 807 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 A0A087WWV3 80 aa16.85■□□□□ 0.29
USP4-203ENST00000415188 PHF20L1A8MW92 1017 aa16.85■□□□□ 0.29
USP4-203ENST00000415188 BIN1O00499 593 aa16.85■□□□□ 0.29
USP4-203ENST00000415188 NT5DC1Q5TFE4 455 aa16.85■□□□□ 0.29
USP4-203ENST00000415188 FERMT2Q96AC1 680 aa16.85■□□□□ 0.29
USP4-203ENST00000415188 AATFQ9NY61 560 aaKnown RBP eCLIP16.85■□□□□ 0.29
USP4-203ENST00000415188 KCNH4Q9UQ05 1017 aa16.85■□□□□ 0.29
USP4-203ENST00000415188 CNTNAP5Q8WYK1 1306 aa16.84■□□□□ 0.29
USP4-203ENST00000415188 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.84■□□□□ 0.29
USP4-203ENST00000415188 KIF2AO00139 706 aaPredicted RBP16.84■□□□□ 0.29
USP4-203ENST00000415188 TRAPPC10P48553 1259 aa16.84■□□□□ 0.29
USP4-203ENST00000415188 PNOCQ13519 176 aa16.84■□□□□ 0.29
USP4-203ENST00000415188 LONRF3Q496Y0 759 aa16.84■□□□□ 0.29
USP4-203ENST00000415188 FAM177A1Q8N128 213 aaPredicted RBP16.84■□□□□ 0.29
USP4-203ENST00000415188 ANKS1AQ92625 1134 aa16.84■□□□□ 0.29
USP4-203ENST00000415188 PAXBP1Q9Y5B6 917 aa16.84■□□□□ 0.29
USP4-203ENST00000415188 CYP2D7A0A087X1C5 515 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 TLR2O60603 784 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 SMC2O95347 1197 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 LDHCP07864 332 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 SKILP12757 684 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 KIF5BP33176 963 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 CCZ1BP86790 482 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 CCZ1P86791 482 aaPredicted RBP16.83■□□□□ 0.28
USP4-203ENST00000415188 FANCCQ00597 558 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 MDM2Q00987 491 aaPredicted RBP16.83■□□□□ 0.28
USP4-203ENST00000415188 NR5A1Q13285 461 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 MOGSQ13724 837 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 MLKLQ8NB16 471 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 PYM1Q9BRP8 204 aaKnown RBP16.83■□□□□ 0.28
USP4-203ENST00000415188 XPO4Q9C0E2 1151 aaKnown RBP16.83■□□□□ 0.28
USP4-203ENST00000415188 ARHGAP39Q9C0H5 1083 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 ZCCHC17Q9NP64 241 aaKnown RBP16.83■□□□□ 0.28
USP4-203ENST00000415188 IFNKQ9P0W0 207 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 PCDHB6Q9Y5E3 794 aa16.83■□□□□ 0.28
USP4-203ENST00000415188 FAM196BA6NMK8 535 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 ECM2O94769 699 aaPredicted RBP16.82■□□□□ 0.28
USP4-203ENST00000415188 PPP4CP60510 307 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 MAP3K10Q02779 954 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 POSTNQ15063 836 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 FILIP1Q7Z7B0 1213 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 ANKRD23Q86SG2 305 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 AMOTL1Q8IY63 956 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 SCYL3Q8IZE3 742 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 CCDC82Q8N4S0 544 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.82■□□□□ 0.28
USP4-203ENST00000415188 PCDHA5Q9Y5H7 936 aa16.82■□□□□ 0.28
USP4-203ENST00000415188 PDHXO00330 501 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 PLEKHA8P1O95397 391 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 BAG3O95817 575 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 TUBB4AP04350 444 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 GNAQP50148 359 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 TPD52L1Q16890 204 aaPredicted RBP16.81■□□□□ 0.28
USP4-203ENST00000415188 DGKHQ86XP1 1220 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 OXER1Q8TDS5 423 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 TNFRSF25Q93038 417 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 SMARCE1Q969G3 411 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 CABP5Q9NP86 173 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 SH3GLB2Q9NR46 395 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 VPS54Q9P1Q0 977 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 ZHX2Q9Y6X8 837 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 V9GY48 417 aaPredicted RBP16.81■□□□□ 0.28
USP4-203ENST00000415188 CENPFP49454 3210 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 ZSWIM8A7E2V4 1837 aa16.81■□□□□ 0.28
USP4-203ENST00000415188 ACTN4O43707 911 aaKnown RBP16.8■□□□□ 0.28
USP4-203ENST00000415188 PRDM1O75626 825 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 TNNT1P13805 278 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 PTPRAP18433 802 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 CALML3P27482 149 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 SARSP49591 514 aaKnown RBP16.8■□□□□ 0.28
USP4-203ENST00000415188 SYCP1Q15431 976 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 C12orf60Q5U649 245 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 CCDC84Q86UT8 332 aaPredicted RBP16.8■□□□□ 0.28
USP4-203ENST00000415188 CMTR1Q8N1G2 835 aaKnown RBP16.8■□□□□ 0.28
USP4-203ENST00000415188 SH3RF3Q8TEJ3 882 aaPredicted RBP16.8■□□□□ 0.28
USP4-203ENST00000415188 PICK1Q9NRD5 415 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 TCP11L1Q9NUJ3 509 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 CPA4Q9UI42 421 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 MAN1B1Q9UKM7 699 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 PTCH2Q9Y6C5 1203 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 POTEFA5A3E0 1075 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 TSPY2A6NKD2 308 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 CXCL11O14625 94 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 POLR2DO15514 142 aaKnown RBP16.8■□□□□ 0.28
USP4-203ENST00000415188 CCP110O43303 1012 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 NPM3O75607 178 aaKnown RBP16.8■□□□□ 0.28
USP4-203ENST00000415188 SCG2P13521 617 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 SFPQP23246 707 aaKnown RBP eCLIP16.8■□□□□ 0.28
USP4-203ENST00000415188 LACTBP83111 547 aaPredicted RBP16.8■□□□□ 0.28
USP4-203ENST00000415188 MORC3Q14149 939 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 PFKFB3Q16875 520 aaPredicted RBP16.8■□□□□ 0.28
USP4-203ENST00000415188 GPAT2Q6NUI2 795 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 C17orf99Q6UX52 265 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 TMC6Q7Z403 805 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 TEX11Q8IYF3 940 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 CCDC112Q8NEF3 446 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 HSD3B7Q9H2F3 369 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 SERTAD1Q9UHV2 236 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms