RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 CTSKP43235 329 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 NOP2P46087 812 aaKnown RBP5.99□□□□□ -1.45
BRCA1-204ENST00000412061 KCNJ6P48051 423 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 GFRA1P56159 465 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 RHBDL3P58872 404 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 BIRC2Q13490 618 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 CRTC3Q6UUV7 619 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 THAP5Q7Z6K1 395 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 TSPYL5Q86VY4 417 aaPredicted RBP5.99□□□□□ -1.45
BRCA1-204ENST00000412061 SPACA3Q8IXA5 215 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 TCTN2Q96GX1 697 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 MRPL4Q9BYD3 311 aaKnown RBP5.99□□□□□ -1.45
BRCA1-204ENST00000412061 GPR55Q9Y2T6 319 aaPredicted RBP5.99□□□□□ -1.45
BRCA1-204ENST00000412061 THRAP3Q9Y2W1 955 aaKnown RBP5.99□□□□□ -1.45
BRCA1-204ENST00000412061 EID1Q9Y6B2 187 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 U3KQE9 123 aa5.99□□□□□ -1.45
BRCA1-204ENST00000412061 H3BS24 57 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 DLX3O60479 287 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 RFPL3O75679 317 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 SCG5P05408 212 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 CD3EP07766 207 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 BMP8BP34820 402 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 MAP4K2Q12851 820 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 IFI16Q16666 785 aaKnown RBP5.98□□□□□ -1.45
BRCA1-204ENST00000412061 DPY19L1Q2PZI1 675 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 FNDC3BQ53EP0 1204 aaKnown RBP5.98□□□□□ -1.45
BRCA1-204ENST00000412061 JAMLQ86YT9 394 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 NETO1Q8TDF5 533 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 HSPA12BQ96MM6 686 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 PIM2Q9P1W9 311 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 SNX11Q9Y5W9 270 aa5.98□□□□□ -1.45
BRCA1-204ENST00000412061 TMEM265A0A087WTH1 108 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 VIL1P09327 827 aaKnown RBP5.97□□□□□ -1.45
BRCA1-204ENST00000412061 TPP2P29144 1249 aaPredicted RBP5.97□□□□□ -1.45
BRCA1-204ENST00000412061 CNGA1P29973 690 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 ECI1P42126 302 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 PCBP3P57721 371 aaKnown RBP5.97□□□□□ -1.45
BRCA1-204ENST00000412061 SCRN1Q12765 414 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 PABPC4Q13310 644 aaKnown RBP eCLIP5.97□□□□□ -1.45
BRCA1-204ENST00000412061 SF1Q15637 639 aaKnown RBP5.97□□□□□ -1.45
BRCA1-204ENST00000412061 DALRD3Q5D0E6 543 aaKnown RBP5.97□□□□□ -1.45
BRCA1-204ENST00000412061 KRT26Q7Z3Y9 468 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 ZDHHC13Q8IUH4 622 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 RAVER1Q8IY67 606 aaKnown RBP5.97□□□□□ -1.45
BRCA1-204ENST00000412061 NINJ1Q92982 152 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 TSR2Q969E8 191 aaKnown RBP5.97□□□□□ -1.45
BRCA1-204ENST00000412061 C8orf48Q96LL4 319 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 RPS6KC1Q96S38 1066 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 ZSWIM5Q9P217 1185 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 RNF112Q9ULX5 631 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 PLAGL2Q9UPG8 496 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 BACE2Q9Y5Z0 518 aa5.97□□□□□ -1.45
BRCA1-204ENST00000412061 SSU72P8A0A1W2PR75 194 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 STXBP3O00186 592 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 AURKAO14965 403 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 CREB3O43889 395 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 RAPGEF3O95398 923 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 FOSL1P15407 271 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 VAV1P15498 845 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 CDKN1CP49918 316 aaPredicted RBP5.96□□□□□ -1.46
BRCA1-204ENST00000412061 EXOSC10Q01780 885 aaKnown RBP5.96□□□□□ -1.46
BRCA1-204ENST00000412061 CBX2Q14781 532 aaPredicted RBP5.96□□□□□ -1.46
BRCA1-204ENST00000412061 C21orf62-AS1Q17RA5 79 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 BRDTQ58F21 947 aaPredicted RBP5.96□□□□□ -1.46
BRCA1-204ENST00000412061 APBB1IPQ7Z5R6 666 aaPredicted RBP5.96□□□□□ -1.46
BRCA1-204ENST00000412061 WDR75Q8IWA0 830 aaKnown RBP5.96□□□□□ -1.46
BRCA1-204ENST00000412061 NIM1KQ8IY84 436 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 PLD6Q8N2A8 252 aaKnown RBP5.96□□□□□ -1.46
BRCA1-204ENST00000412061 TMEM145Q8NBT3 493 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 LINC00116Q8NCU8 138 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 UBE2FQ969M7 185 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 MFSD3Q96ES6 412 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 MCMBPQ9BTE3 642 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 SEMA3GQ9NS98 782 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 SFMBT1Q9UHJ3 866 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 DUSP13Q9UII6 198 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 ATP8A1Q9Y2Q0 1164 aa5.96□□□□□ -1.46
BRCA1-204ENST00000412061 C2orf71A6NGG8 1288 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 ZNF205O95201 554 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 SYPP08247 313 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 ENDOUP21128 410 aaKnown RBP5.95□□□□□ -1.46
BRCA1-204ENST00000412061 LTKP29376 864 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 GABREP78334 506 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 GAB4Q2WGN9 574 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 TRIM61Q5EBN2 209 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 SLC35F1Q5T1Q4 408 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 RNF111Q6ZNA4 994 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 TMPRSS7Q7RTY8 843 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 USHBP1Q8N6Y0 703 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 COPS5Q92905 334 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 C1orf159Q96HA4 380 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 FCRL3Q96P31 734 aaPredicted RBP5.95□□□□□ -1.46
BRCA1-204ENST00000412061 SLC12A9Q9BXP2 914 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 FAM126AQ9BYI3 521 aaPredicted RBP5.95□□□□□ -1.46
BRCA1-204ENST00000412061 KRTAP9-9Q9BYP9 154 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 KRTAP9-4Q9BYQ2 154 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 ZC3H7BQ9UGR2 993 aaKnown RBP5.95□□□□□ -1.46
BRCA1-204ENST00000412061 TCFL5Q9UL49 500 aa5.95□□□□□ -1.46
BRCA1-204ENST00000412061 PITPNM2Q9BZ72 1349 aa5.94□□□□□ -1.46
BRCA1-204ENST00000412061 PRR19A6NJB7 356 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms