RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 GRIN1Q05586 938 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 USP17L24Q0WX57 530 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 NONOQ15233 471 aaKnown RBP eCLIP14.22□□□□□ -0.132e-8■□□□□ 11
CHMP3-204ENST00000409727 CAMK4Q16566 473 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 SPECC1Q5M775 1068 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 USP17L6PQ6QN14 398 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 CCDC73Q6ZRK6 1079 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 KRT25Q7Z3Z0 450 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 CLMNQ96JQ2 1002 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 SLF1Q9BQI6 1058 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 ELP3Q9H9T3 547 aa14.22□□□□□ -0.13
CHMP3-204ENST00000409727 MRPL12P52815 198 aaKnown RBP14.21□□□□□ -0.13
CHMP3-204ENST00000409727 AXDND1Q5T1B0 1012 aaPredicted RBP14.21□□□□□ -0.13
CHMP3-204ENST00000409727 CCDC183Q5T5S1 534 aa14.21□□□□□ -0.13
CHMP3-204ENST00000409727 KRI1Q8N9T8 703 aaKnown RBP14.21□□□□□ -0.13
CHMP3-204ENST00000409727 TBCKQ8TEA7 893 aa14.21□□□□□ -0.13
CHMP3-204ENST00000409727 MRPS27Q92552 414 aaKnown RBP14.21□□□□□ -0.13
CHMP3-204ENST00000409727 RANBP17Q9H2T7 1088 aaKnown RBP14.21□□□□□ -0.13
CHMP3-204ENST00000409727 AFG3L2Q9Y4W6 797 aa14.21□□□□□ -0.13
CHMP3-204ENST00000409727 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.21□□□□□ -0.14
CHMP3-204ENST00000409727 TRAPPC10P48553 1259 aa14.21□□□□□ -0.14
CHMP3-204ENST00000409727 PTGDRQ13258 359 aa14.21□□□□□ -0.14
CHMP3-204ENST00000409727 LETM2Q2VYF4 491 aa14.21□□□□□ -0.14
CHMP3-204ENST00000409727 TMOD4Q9NZQ9 345 aa14.21□□□□□ -0.14
CHMP3-204ENST00000409727 FBXO2Q9UK22 296 aaPredicted RBP14.21□□□□□ -0.14
CHMP3-204ENST00000409727 OTOFQ9HC10 1997 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 A0A1W2PQ27 194 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 A0A1W2PQ64 194 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 A0A1W2PQD8 194 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 PLA2G6O60733 806 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 NDUFA8P51970 172 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 SHC4Q6S5L8 630 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 CPXCR1Q8N123 301 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 PRPF38AQ8NAV1 312 aaKnown RBP14.2□□□□□ -0.14
CHMP3-204ENST00000409727 OTUD5Q96G74 571 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 PHIPQ8WWQ0 1821 aa14.2□□□□□ -0.14
CHMP3-204ENST00000409727 C19orf81C9J6K1 198 aa14.19□□□□□ -0.14
CHMP3-204ENST00000409727 CCNT1O60563 726 aaKnown RBP14.19□□□□□ -0.14
CHMP3-204ENST00000409727 CUTAO60888 179 aa14.19□□□□□ -0.14
CHMP3-204ENST00000409727 ANKRD13AQ8IZ07 590 aa14.19□□□□□ -0.14
CHMP3-204ENST00000409727 AGBL1Q96MI9 1066 aa14.19□□□□□ -0.14
CHMP3-204ENST00000409727 NMRK2Q9NPI5 230 aa14.19□□□□□ -0.14
CHMP3-204ENST00000409727 CTDP1Q9Y5B0 961 aaPredicted RBP14.19□□□□□ -0.14
CHMP3-204ENST00000409727 PFKFB1P16118 471 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 PTPREP23469 700 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 HOXA13P31271 388 aaPredicted RBP14.18□□□□□ -0.14
CHMP3-204ENST00000409727 DSG3P32926 999 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 CLK2P49760 499 aaKnown RBP14.18□□□□□ -0.14
CHMP3-204ENST00000409727 FAM160A1Q05DH4 1040 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 SNW1Q13573 536 aaKnown RBP14.18□□□□□ -0.14
CHMP3-204ENST00000409727 NEK8Q86SG6 692 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 LDHDQ86WU2 507 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 CSRNP2Q9H175 543 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 NUP62CLQ9H1M0 184 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 CCPG1Q9ULG6 757 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 VWA3AA6NCI4 1184 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 MEIS2O14770 477 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 OPLAHO14841 1288 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 BMP15O95972 392 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 CMA1P23946 247 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 ATP2C1P98194 919 aaPredicted RBP14.18□□□□□ -0.14
CHMP3-204ENST00000409727 ARMC9Q7Z3E5 817 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 WNK4Q96J92 1243 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 TNMDQ9H2S6 317 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 RAVER2Q9HCJ3 691 aaKnown RBP14.18□□□□□ -0.14
CHMP3-204ENST00000409727 HOMER2Q9NSB8 354 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 PPP1R9AQ9ULJ8 1098 aa14.18□□□□□ -0.14
CHMP3-204ENST00000409727 SRPRBQ9Y5M8 271 aaKnown RBP14.18□□□□□ -0.14
CHMP3-204ENST00000409727 IRF6O14896 467 aa14.17□□□□□ -0.14
CHMP3-204ENST00000409727 KINO60870 393 aaKnown RBP14.17□□□□□ -0.14
CHMP3-204ENST00000409727 CFBP00751 764 aa14.17□□□□□ -0.14
CHMP3-204ENST00000409727 GAS2L3Q86XJ1 694 aa14.17□□□□□ -0.14
CHMP3-204ENST00000409727 CKAP2LQ8IYA6 745 aa14.17□□□□□ -0.14
CHMP3-204ENST00000409727 ENGASEQ8NFI3 743 aa14.17□□□□□ -0.14
CHMP3-204ENST00000409727 ATG4CQ96DT6 458 aa14.17□□□□□ -0.14
CHMP3-204ENST00000409727 DDX19AQ9NUU7 478 aaKnown RBP14.17□□□□□ -0.14
CHMP3-204ENST00000409727 PAPPA2Q9BXP8 1791 aa14.17□□□□□ -0.14
CHMP3-204ENST00000409727 SMCHD1A6NHR9 2005 aa14.17□□□□□ -0.14
CHMP3-204ENST00000409727 ZNF536O15090 1300 aa14.17□□□□□ -0.14
CHMP3-204ENST00000409727 ICAM1P05362 532 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 RESP18Q5W5W9 173 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 GADL1Q6ZQY3 521 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 FCHSD1Q86WN1 690 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 FMR1NBQ8N0W7 255 aaPredicted RBP14.16□□□□□ -0.14
CHMP3-204ENST00000409727 RBM46Q8TBY0 533 aaKnown RBP14.16□□□□□ -0.14
CHMP3-204ENST00000409727 TBC1D5Q92609 795 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 C12orf42Q96LP6 360 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 GLT8D2Q9H1C3 349 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 TMEM60Q9H2L4 133 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 CLSTN2Q9H4D0 955 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 SPDYE3A6NKU9 549 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 TDP2O95551 362 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 ALAS1P13196 640 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 ZNF445P59923 1031 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 TRAF1Q13077 416 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 IL17AQ16552 155 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 TREML2Q5T2D2 321 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 ERO1BQ86YB8 467 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 C4orf32Q8N8J7 132 aa14.16□□□□□ -0.14
CHMP3-204ENST00000409727 FERMT2Q96AC1 680 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms