RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 COG2Q14746 738 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 UBE2SQ16763 222 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 PRAMEF18Q5VWM3 479 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 MAGEF1Q9HAY2 307 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 RAVER2Q9HCJ3 691 aaKnown RBP9.26□□□□□ -0.93
PTPRD-204ENST00000397606 RCOR1Q9UKL0 485 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 SCN11AQ9UI33 1791 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 SNAP25P60880 206 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 SPA17Q15506 151 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 SCYL3Q8IZE3 742 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 RNF146Q9NTX7 359 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 WNT10BO00744 389 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 CAP2P40123 477 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 UBXN2AP68543 259 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 SNAPC2Q13487 334 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 APOBEC3HQ6NTF7 200 aaKnown RBP9.26□□□□□ -0.93
PTPRD-204ENST00000397606 STAG2Q8N3U4 1231 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 LINC00301Q8NCQ3 95 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 CUEDC2Q9H467 287 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 SERTAD1Q9UHV2 236 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 GAKO14976 1311 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 NWD2Q9ULI1 1742 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 A0A0U1RQG5 324 aaPredicted RBP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 ADCY5O95622 1261 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 SMARCA1P28370 1054 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 HOXA13P31271 388 aaPredicted RBP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 STX17P56962 302 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 ATP6V0A1Q93050 837 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 PGBD1Q96JS3 809 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 STAT3P40763 770 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 STRN3Q13033 797 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 FAM160B1Q5W0V3 765 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 ARL6IP4Q66PJ3 421 aaKnown RBP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 DYMQ7RTS9 669 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 TMC6Q7Z403 805 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 SRBD1Q8N5C6 995 aaKnown RBP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 KCNQ5Q9NR82 932 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 PHACTR2O75167 634 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 CCDC172P0C7W6 258 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 PDHBP11177 359 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 EIF2AK2P19525 551 aaKnown RBP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 FAM43AQ8N2R8 423 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 MNS1Q8NEH6 495 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 TRERF1Q96PN7 1200 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 IMPG2Q9BZV3 1241 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 TTC12Q9H892 705 aaPredicted RBP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 TRAF5O00463 557 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 SETQ01105 290 aaPredicted RBP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 ORC2Q13416 577 aaPredicted RBP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 KIAA1328Q86T90 577 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 CDAN1Q8IWY9 1227 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 MYCT1Q8N699 235 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 CPLX3Q8WVH0 158 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 SYMPKQ92797 1274 aaKnown RBP9.25□□□□□ -0.93
PTPRD-204ENST00000397606 CLIC6Q96NY7 704 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 IWS1Q96ST2 819 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 SYT17Q9BSW7 474 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 ACAD9Q9H845 621 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 NRBP2Q9NSY0 501 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 PCDHA6Q9UN73 950 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 FRMD4BQ9Y2L6 1034 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 PCDHA8Q9Y5H6 950 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 TAF6LQ9Y6J9 622 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 PLCH1Q4KWH8 1693 aa9.25□□□□□ -0.93
PTPRD-204ENST00000397606 DDTLA6NHG4 134 aaPredicted RBP9.24□□□□□ -0.93
PTPRD-204ENST00000397606 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.24□□□□□ -0.93
PTPRD-204ENST00000397606 CLEC10AQ8IUN9 316 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 RMDN3Q96TC7 470 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 SCAF8Q9UPN6 1271 aaKnown RBP9.24□□□□□ -0.93
PTPRD-204ENST00000397606 CNGA1P29973 690 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 ARHGAP29Q52LW3 1261 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 TDRD12Q587J7 1177 aaKnown RBP9.24□□□□□ -0.93
PTPRD-204ENST00000397606 GPBP1Q86WP2 473 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 NSUN6Q8TEA1 469 aaKnown RBP9.24□□□□□ -0.93
PTPRD-204ENST00000397606 SPAG5Q96R06 1193 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 CSRNP2Q9H175 543 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 DOT1LQ8TEK3 1739 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 HSP90AA4PQ58FG1 418 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 LDHDQ86WU2 507 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 GTF3C2Q8WUA4 911 aaPredicted RBP9.24□□□□□ -0.93
PTPRD-204ENST00000397606 TRPC6Q9Y210 931 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 CETN3O15182 167 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 CALUO43852 315 aaPredicted RBP9.24□□□□□ -0.93
PTPRD-204ENST00000397606 XKR9Q5GH70 373 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 KRBA2Q6ZNG9 492 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 SEPT14Q6ZU15 432 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 USP50Q70EL3 339 aaPredicted RBP9.24□□□□□ -0.93
PTPRD-204ENST00000397606 AMIGO3Q86WK7 504 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 TEX13BQ9BXU2 312 aa9.24□□□□□ -0.93
PTPRD-204ENST00000397606 SRPRBQ9Y5M8 271 aaKnown RBP9.24□□□□□ -0.93
PTPRD-204ENST00000397606 ZSCAN12O43309 604 aa9.23□□□□□ -0.93
PTPRD-204ENST00000397606 CELF2O95319 508 aaKnown RBP9.23□□□□□ -0.93
PTPRD-204ENST00000397606 NLRP12P59046 1061 aa9.23□□□□□ -0.93
PTPRD-204ENST00000397606 TTBK2Q6IQ55 1244 aa9.23□□□□□ -0.93
PTPRD-204ENST00000397606 MAEAQ7L5Y9 396 aa9.23□□□□□ -0.93
PTPRD-204ENST00000397606 CERS5Q8N5B7 392 aa9.23□□□□□ -0.93
PTPRD-204ENST00000397606 CAGE1Q8TC20 777 aa9.23□□□□□ -0.93
PTPRD-204ENST00000397606 MMRN2Q9H8L6 949 aa9.23□□□□□ -0.93
PTPRD-204ENST00000397606 LARSQ9P2J5 1176 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms