RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 SMIM22K7EJ46 135 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 USO1O60763 962 aaKnown RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 RNF40O75150 1001 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 PRPF6O94906 941 aaKnown RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 CLSTN1O94985 981 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 FGFR1OPO95684 399 aaKnown RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 TRIM21P19474 475 aaKnown RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 ATP6V1AP38606 617 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 MECOMQ03112 1051 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 SPA17Q15506 151 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 TUBB8Q3ZCM7 444 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 FKBP15Q5T1M5 1219 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 CCNI2Q6ZMN8 369 aaPredicted RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 RASSF8Q8NHQ8 419 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 ANKRD2Q9GZV1 360 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 FAM107BQ9H098 131 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 FAM204AQ9H8W3 233 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 PCDHA6Q9UN73 950 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 JRKLQ9Y4A0 524 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 PCDHA8Q9Y5H6 950 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 CASZ1Q86V15 1759 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 FAM205AQ6ZU69 1335 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 MYH1P12882 1939 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 COBLO75128 1261 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 PPFIA4O75335 1185 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 TACC1O75410 805 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 LCA5LO95447 670 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 SYF2O95926 243 aaKnown RBP11.16□□□□□ -0.62
COL17A1-203ENST00000393211 SMARCA1P28370 1054 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 PMS1P54277 932 aaKnown RBP11.16□□□□□ -0.62
COL17A1-203ENST00000393211 FAM47AQ5JRC9 791 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 CNNM4Q6P4Q7 775 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 KRT25Q7Z3Z0 450 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 CCDC155Q8N6L0 562 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 PNMA1Q8ND90 353 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 SECISBP2LQ93073 1101 aaKnown RBP11.16□□□□□ -0.62
COL17A1-203ENST00000393211 CRACR2AQ9BSW2 395 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 EDEM3Q9BZQ6 932 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 BARHL2Q9NY43 387 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 TRIM10Q9UDY6 481 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 MAPK8IP1Q9UQF2 711 aa11.16□□□□□ -0.62
COL17A1-203ENST00000393211 ZC3H4Q9UPT8 1303 aaKnown RBP11.15□□□□□ -0.62
COL17A1-203ENST00000393211 ROBO1Q9Y6N7 1651 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 LOC102724428A0A0B4J2F2 783 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 B4DLN1 442 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 NMT2O60551 498 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 SHOX2O60902 331 aaPredicted RBP11.15□□□□□ -0.62
COL17A1-203ENST00000393211 TFRCP02786 760 aaKnown RBP11.15□□□□□ -0.62
COL17A1-203ENST00000393211 TNNT3P45378 269 aaPredicted RBP11.15□□□□□ -0.62
COL17A1-203ENST00000393211 SIK1P57059 783 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 C12orf60Q5U649 245 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 LRRC31Q6UY01 552 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 CCDC84Q86UT8 332 aaPredicted RBP11.15□□□□□ -0.62
COL17A1-203ENST00000393211 CABP7Q86V35 215 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 CAGE1Q8TC20 777 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 BBXQ8WY36 941 aaPredicted RBP11.15□□□□□ -0.62
COL17A1-203ENST00000393211 CNOT6LQ96LI5 555 aaKnown RBP11.15□□□□□ -0.62
COL17A1-203ENST00000393211 TRIM9Q9C026 710 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 EFCC1Q9HA90 598 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 HDAC6Q9UBN7 1215 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 FAM184BQ9ULE4 1060 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 PLAGL2Q9UPG8 496 aa11.15□□□□□ -0.62
COL17A1-203ENST00000393211 FLT1P17948 1338 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 PVALEFA0A1B0GWK0 134 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 RASSF10A6NK89 507 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 STXBP3O00186 592 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 PES1O00541 588 aaKnown RBP11.14□□□□□ -0.63
COL17A1-203ENST00000393211 ENC1O14682 589 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 OR52Z1P0C646 297 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 IDEP14735 1019 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 TCP1P17987 556 aaKnown RBP11.14□□□□□ -0.63
COL17A1-203ENST00000393211 TNFRSF8P28908 595 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 HIBADHP31937 336 aaKnown RBP11.14□□□□□ -0.63
COL17A1-203ENST00000393211 MAGEA9P43362 315 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 MTIF2P46199 727 aaKnown RBP11.14□□□□□ -0.63
COL17A1-203ENST00000393211 TFAP4Q01664 338 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 PDE4DQ08499 809 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 MIIPQ5JXC2 388 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 GBP6Q6ZN66 633 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 CERS3Q8IU89 383 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 AENQ8WTP8 325 aaKnown RBP11.14□□□□□ -0.63
COL17A1-203ENST00000393211 SMARCC1Q92922 1105 aaPredicted RBP11.14□□□□□ -0.63
COL17A1-203ENST00000393211 CCDC42Q96M95 316 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 NOC4LQ9BVI4 516 aaKnown RBP11.14□□□□□ -0.63
COL17A1-203ENST00000393211 SPZ1Q9BXG8 430 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 ZMYND12Q9H0C1 365 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 TMEM60Q9H2L4 133 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 AGPAT5Q9NUQ2 364 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 MAD2L2Q9UI95 211 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 SNX12Q9UMY4 172 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 THRAP3Q9Y2W1 955 aaKnown RBP11.14□□□□□ -0.63
COL17A1-203ENST00000393211 COL4A1P02462 1669 aa11.14□□□□□ -0.63
COL17A1-203ENST00000393211 A0A0U1RQG5 324 aaPredicted RBP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 PALM3A6NDB9 673 aaPredicted RBP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 PJA2O43164 708 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 VEGFAP15692 232 aaPredicted RBP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 GNA11P29992 359 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 INF2Q27J81 1249 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 GLE1Q53GS7 698 aaKnown RBP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 ANKRD40Q6AI12 368 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms