RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TTF2Q9UNY4 1162 aaKnown RBP10.83□□□□□ -0.67
COL6A3-204ENST00000392003 PCDHA8Q9Y5H6 950 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 TEX33O43247 280 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 RAD21O60216 631 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 GUCY2CP25092 1073 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 CDKAL1Q5VV42 579 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 C16orf86Q6ZW13 317 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 VAT1LQ9HCJ6 419 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 DISC1Q9NRI5 854 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 DONSONQ9NYP3 566 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 OGFRQ9NZT2 677 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 NHSQ6T4R5 1651 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 KIAA1551Q9HCM1 1747 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 STXBP3O00186 592 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 PES1O00541 588 aaKnown RBP10.83□□□□□ -0.68
COL6A3-204ENST00000392003 CDC25AP30304 524 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 CCT6AP40227 531 aaKnown RBP10.83□□□□□ -0.68
COL6A3-204ENST00000392003 ATP2B2Q01814 1243 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 CCDC51Q96ER9 411 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 MASTLQ96GX5 879 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 COA1Q9GZY4 146 aa10.83□□□□□ -0.68
COL6A3-204ENST00000392003 ARGLU1Q9NWB6 273 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-204ENST00000392003 MAGEC2Q9UBF1 373 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-204ENST00000392003 IL1R1P14778 569 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 SCNN1DP51172 638 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 IL17AQ16552 155 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 TMEM139Q8IV31 216 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 SMCO2A6NFE2 343 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 MYL1P05976 194 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 SRGNP10124 158 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 RBL2Q08999 1139 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 TSR1Q2NL82 804 aaKnown RBP10.82□□□□□ -0.68
COL6A3-204ENST00000392003 LETM2Q2VYF4 491 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 ZSCAN29Q8IWY8 852 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-204ENST00000392003 VPS16Q9H269 839 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 LCMT1Q9UIC8 334 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 THSD7AQ9UPZ6 1657 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 FLT1P17948 1338 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 PSMA7O14818 248 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 PRPHP41219 470 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 TRIM14Q14142 442 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 PPP2R5AQ15172 486 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 C4orf32Q8N8J7 132 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 CCSER1Q9C0I3 900 aa10.82□□□□□ -0.68
COL6A3-204ENST00000392003 TTC36A6NLP5 189 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 KCNJ18B7U540 433 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 H7C1D1 291 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 CYTH3O43739 400 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 COPB1P53618 953 aaKnown RBP10.81□□□□□ -0.68
COL6A3-204ENST00000392003 KCNJ12Q14500 433 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 ERCC6LQ2NKX8 1250 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 TYW1BQ6NUM6 668 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 TRIM65Q6PJ69 517 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 TOGARAM2Q6ZUX3 1019 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 AK8Q96MA6 479 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 NUP88Q99567 741 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-204ENST00000392003 RASSF4Q9H2L5 321 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 CUEDC2Q9H467 287 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 MAGEF1Q9HAY2 307 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 TAB2Q9NYJ8 693 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 LIMA1Q9UHB6 759 aaKnown RBP10.81□□□□□ -0.68
COL6A3-204ENST00000392003 MAPK8IP1Q9UQF2 711 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 TNRC6CQ9HCJ0 1690 aaKnown RBP10.81□□□□□ -0.68
COL6A3-204ENST00000392003 CCNT1O60563 726 aaKnown RBP10.81□□□□□ -0.68
COL6A3-204ENST00000392003 OR52Z1P0C646 297 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 AMPD3Q01432 767 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 KRT31Q15323 416 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 CCDC93Q567U6 631 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 USP17L2Q6R6M4 530 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 CABP7Q86V35 215 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 FAM163AQ96GL9 167 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-204ENST00000392003 PLIN2Q99541 437 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 DESI2Q9BSY9 194 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 ZMYND12Q9H0C1 365 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 CXorf56Q9H5V9 222 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 DBNDD1Q9H9R9 158 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 USP40Q9NVE5 1235 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 MPHOSPH10O00566 681 aaKnown RBP10.81□□□□□ -0.68
COL6A3-204ENST00000392003 ADAMTS3O15072 1205 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 KIF5CO60282 957 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 SMARCA1P28370 1054 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 NBPF9Q3BBW0 867 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 NEK8Q86SG6 692 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 CEP95Q96GE4 821 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 TRIM47Q96LD4 638 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 TMEM60Q9H2L4 133 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 GDAQ9Y2T3 454 aa10.81□□□□□ -0.68
COL6A3-204ENST00000392003 ITIH6Q6UXX5 1313 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 MFAP3LO75121 409 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 COBLO75128 1261 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 CASP14P31944 242 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 EN1Q05925 392 aaPredicted RBP10.8□□□□□ -0.68
COL6A3-204ENST00000392003 ARHGAP29Q52LW3 1261 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 TMTC1Q8IUR5 882 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 CALML4Q96GE6 196 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 CPVLQ9H3G5 476 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 PRCPP42785 496 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 UBXN1Q04323 297 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 KCNB1Q14721 858 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 TCP11X2Q5H9J9 407 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms