RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 MCTP1Q6DN14 999 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 CCSAPQ6IQ19 270 aaPredicted RBP9.61□□□□□ -0.87
CD44-205ENST00000352818 PTCRAQ6ISU1 281 aaPredicted RBP9.61□□□□□ -0.87
CD44-205ENST00000352818 STOX1Q6ZVD7 989 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 DHX32Q7L7V1 743 aaKnown RBP9.61□□□□□ -0.87
CD44-205ENST00000352818 CCDC83Q8IWF9 413 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 ZSCAN29Q8IWY8 852 aaPredicted RBP9.61□□□□□ -0.87
CD44-205ENST00000352818 CCAR1Q8IX12 1150 aaKnown RBP9.61□□□□□ -0.87
CD44-205ENST00000352818 TMEM199Q8N511 208 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 TMEM87AQ8NBN3 555 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 ARNTL2Q8WYA1 636 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 CHMP4CQ96CF2 233 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 OSBPL5Q9H0X9 879 aaPredicted RBP9.61□□□□□ -0.87
CD44-205ENST00000352818 EMILIN3Q9NT22 766 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 ATP6V1DQ9Y5K8 247 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 SETXQ7Z333 2677 aaKnown RBP9.61□□□□□ -0.87
CD44-205ENST00000352818 MYH13Q9UKX3 1938 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 PDS5AQ29RF7 1337 aaKnown RBP9.6□□□□□ -0.87
CD44-205ENST00000352818 MAP1BP46821 2468 aaKnown RBP9.6□□□□□ -0.87
CD44-205ENST00000352818 FOXP2O15409 715 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 STX6O43752 255 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 PDE6AP16499 860 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 TAL1P17542 331 aaPredicted RBP9.6□□□□□ -0.87
CD44-205ENST00000352818 PDCP20941 246 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 GJB2P29033 226 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 ACLYP53396 1101 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 EXOSC10Q01780 885 aaKnown RBP9.6□□□□□ -0.87
CD44-205ENST00000352818 ALX1Q15699 326 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 BMP8AQ7Z5Y6 402 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 VPS37DQ86XT2 251 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 SPATA5Q8NB90 893 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.6□□□□□ -0.87
CD44-205ENST00000352818 PIH1D3Q9NQM4 214 aaKnown RBP9.6□□□□□ -0.87
CD44-205ENST00000352818 RALYQ9UKM9 306 aaKnown RBP9.6□□□□□ -0.87
CD44-205ENST00000352818 RABGAP1Q9Y3P9 1069 aa9.6□□□□□ -0.87
CD44-205ENST00000352818 TCRBV5S4A2TA0A5A2 114 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 MYADML2A6NDP7 307 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 PRR23AA6NEV1 266 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 E7EWF7 191 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 GPAA1O43292 621 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 IGSF3O75054 1194 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 MBD3O95983 291 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 F13A1P00488 732 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 ATP2A2P16615 1042 aaKnown RBP9.59□□□□□ -0.87
CD44-205ENST00000352818 SYT1P21579 422 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 ADORA2AP29274 412 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 IRS1P35568 1242 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 EVCP57679 992 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 RASGRF1Q13972 1273 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 IMMTQ16891 758 aaKnown RBP9.59□□□□□ -0.87
CD44-205ENST00000352818 WDR78Q5VTH9 848 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 TMED8Q6PL24 325 aaPredicted RBP9.59□□□□□ -0.87
CD44-205ENST00000352818 PI16Q6UXB8 463 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 Q6ZUG5 572 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 FAM126BQ8IXS8 530 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 KLHDC9Q8NEP7 349 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 GTF3C6Q969F1 213 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 LLPHQ9BRT6 129 aaKnown RBP9.59□□□□□ -0.87
CD44-205ENST00000352818 PUS7LQ9H0K6 701 aaKnown RBP9.59□□□□□ -0.87
CD44-205ENST00000352818 STARD7Q9NQZ5 370 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 MUTYHQ9UIF7 546 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 TRPC6Q9Y210 931 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 SLC4A7Q9Y6M7 1214 aa9.59□□□□□ -0.87
CD44-205ENST00000352818 DDX49Q9Y6V7 483 aaKnown RBP9.59□□□□□ -0.87
CD44-205ENST00000352818 EP300Q09472 2414 aaPredicted RBP9.58□□□□□ -0.88
CD44-205ENST00000352818 MYH15Q9Y2K3 1946 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 GOLGA6L3A6NEY3 463 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 SEMA3EO15041 775 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 PFKFB2O60825 505 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 CD4P01730 458 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 VCPP55072 806 aaKnown RBP9.58□□□□□ -0.88
CD44-205ENST00000352818 PICALMQ13492 652 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 COL9A3Q14050 684 aaPredicted RBP9.58□□□□□ -0.88
CD44-205ENST00000352818 TTLL4Q14679 1199 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 SLFNL1Q499Z3 407 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 HERC4Q5GLZ8 1057 aaPredicted RBP9.58□□□□□ -0.88
CD44-205ENST00000352818 TMEM67Q5HYA8 995 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 SLC9C2Q5TAH2 1124 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 RNF180Q86T96 592 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 NEK9Q8TD19 979 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 GTF3C2Q8WUA4 911 aaPredicted RBP9.58□□□□□ -0.88
CD44-205ENST00000352818 WNT8AQ9H1J5 351 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 TMOD4Q9NZQ9 345 aa9.58□□□□□ -0.88
CD44-205ENST00000352818 ZNF532Q9HCE3 1301 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 SPTBN2O15020 2390 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 GPR179Q6PRD1 2367 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 FGAP02671 866 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 RARBP10826 455 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 GNAT2P19087 354 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 ZNF445P59923 1031 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 MB21D2Q8IYB1 491 aaPredicted RBP9.57□□□□□ -0.88
CD44-205ENST00000352818 RGS22Q8NE09 1264 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 SMARCC2Q8TAQ2 1214 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 GDPD5Q8WTR4 605 aa9.57□□□□□ -0.88
CD44-205ENST00000352818 ATOH1Q92858 354 aaPredicted RBP9.57□□□□□ -0.88
CD44-205ENST00000352818 ZNF274Q96GC6 653 aaPredicted RBP9.57□□□□□ -0.88
CD44-205ENST00000352818 TSEN34Q9BSV6 310 aaKnown RBP9.57□□□□□ -0.88
CD44-205ENST00000352818 MTIF3Q9H2K0 278 aaKnown RBP9.57□□□□□ -0.88
CD44-205ENST00000352818 GNL3LQ9NVN8 582 aaKnown RBP9.57□□□□□ -0.88
CD44-205ENST00000352818 MTMR6Q9Y217 621 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms