RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 MTF1Q14872 753 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 NXNQ6DKJ4 435 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 H2AFVQ71UI9 128 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 PNMA1Q8ND90 353 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 PRPF31Q8WWY3 499 aaKnown RBP9.53□□□□□ -0.88
RTN3-202ENST00000339997 KIFAP3Q92845 792 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 C8orf37Q96NL8 207 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 AOX1Q06278 1338 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 KLRF2D3W0D1 207 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 HSPA2P54652 639 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 PALM2Q8IXS6 379 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 CCDC89Q8N998 374 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 FAM133AQ8N9E0 248 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 PUS7LQ9H0K6 701 aaKnown RBP9.53□□□□□ -0.88
RTN3-202ENST00000339997 RCOR1Q9UKL0 485 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 GOLGA8KD6RF30 607 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 DAPK3O43293 454 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 CHGBP05060 677 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 ST5P78524 1137 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 FOXD4Q12950 439 aaPredicted RBP9.53□□□□□ -0.88
RTN3-202ENST00000339997 PABPC4Q13310 644 aaKnown RBP eCLIP9.53□□□□□ -0.883e-7■■□□□ 12.6
RTN3-202ENST00000339997 HAUS3Q68CZ6 603 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 RIN2Q8WYP3 895 aaPredicted RBP9.53□□□□□ -0.88
RTN3-202ENST00000339997 RNF34Q969K3 372 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 OSBP2Q969R2 916 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 ADAM33Q9BZ11 813 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 GGT7Q9UJ14 662 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 DENND2AQ9ULE3 1009 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 ZNF148Q9UQR1 794 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 GDAQ9Y2T3 454 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 PLA2R1Q13018 1463 aa9.52□□□□□ -0.88
RTN3-202ENST00000339997 BLMP54132 1417 aaPredicted RBP9.52□□□□□ -0.88
RTN3-202ENST00000339997 EIF3CLB5ME19 914 aaKnown RBP9.52□□□□□ -0.89
RTN3-202ENST00000339997 H7C1D1 291 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 CALUO43852 315 aaPredicted RBP9.52□□□□□ -0.89
RTN3-202ENST00000339997 HDLBPQ00341 1268 aaKnown RBP9.52□□□□□ -0.89
RTN3-202ENST00000339997 KIF23Q02241 960 aaPredicted RBP9.52□□□□□ -0.89
RTN3-202ENST00000339997 TRPC3Q13507 836 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 ZNF653Q96CK0 615 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 PLEKHF1Q96S99 279 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 EIF3CQ99613 913 aaKnown RBP9.52□□□□□ -0.89
RTN3-202ENST00000339997 FAM167BQ9BTA0 163 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 RAB17Q9H0T7 212 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 NUP160Q12769 1436 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 I3L4J1 428 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 M0R2C6 588 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 MEIS1O00470 390 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 SERPINB6P35237 376 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 IRX4P78413 519 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 MTMR3Q13615 1198 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 AP1ARQ63HQ0 302 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 KCNV2Q8TDN2 545 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 ABTB1Q969K4 478 aaPredicted RBP9.52□□□□□ -0.89
RTN3-202ENST00000339997 CPVLQ9H3G5 476 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 BTG4Q9NY30 223 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 PREX2Q70Z35 1606 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 UHRF1BP1Q6BDS2 1440 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 SYNJ2BP-COX16A0A087WUM0 186 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 TRIM49BA6NDI0 452 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 FOXN1O15353 648 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 PDE8AO60658 829 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 TMOD1P28289 359 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 EIF4A3P38919 411 aaKnown RBP9.52□□□□□ -0.89
RTN3-202ENST00000339997 SUPT20HQ8NEM7 779 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 CCDC51Q96ER9 411 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 DDX27Q96GQ7 796 aaKnown RBP9.52□□□□□ -0.89
RTN3-202ENST00000339997 ZSCAN10Q96SZ4 725 aaPredicted RBP9.52□□□□□ -0.89
RTN3-202ENST00000339997 HAUS7Q99871 368 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 SLC52A2Q9HAB3 445 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 COX16Q9P0S2 106 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 KIAA1024Q9UPX6 916 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 TACC3Q9Y6A5 838 aa9.52□□□□□ -0.89
RTN3-202ENST00000339997 A0A087WUV0 522 aaPredicted RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 UNC13BO14795 1591 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 MKRN4PQ13434 485 aaPredicted RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 SMAD1Q15797 465 aaKnown RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 RPGRIP1Q96KN7 1286 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 CYTH2Q99418 400 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 GOLPH3LQ9H4A5 285 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 GREM2Q9H772 168 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 KANSL2Q9H9L4 492 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 ZNF521Q96K83 1311 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 CASQ2O14958 399 aaPredicted RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 CRCPO75575 148 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 GUCY2CP25092 1073 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 EEF1GP26641 437 aaKnown RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 SMTNP53814 917 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 KRT25Q7Z3Z0 450 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 SPICE1Q8N0Z3 855 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 ELAC2Q9BQ52 826 aaKnown RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 MAD1L1Q9Y6D9 718 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 A2MP01023 1474 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 TRPA1O75762 1119 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 SCNN1DP51172 638 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 FAM26FQ5R3K3 315 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 CC2D1AQ6P1N0 951 aaPredicted RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 FAM47EQ6ZV65 393 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 VSTM4Q8IW00 320 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 CCDC197Q8NCU1 140 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 EXOC4Q96A65 974 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms