RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 KCNK18Q7Z418 384 aa9.97□□□□□ -0.81
SNCA-201ENST00000336904 CCDC84Q86UT8 332 aaPredicted RBP9.97□□□□□ -0.81
SNCA-201ENST00000336904 TDRD3Q9H7E2 651 aaKnown RBP9.97□□□□□ -0.81
SNCA-201ENST00000336904 ST7Q9NRC1 585 aa9.97□□□□□ -0.81
SNCA-201ENST00000336904 GAKO14976 1311 aa9.97□□□□□ -0.81
SNCA-201ENST00000336904 CLRN2A0PK11 232 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 AKR1B15C9JRZ8 316 aaPredicted RBP9.96□□□□□ -0.81
SNCA-201ENST00000336904 HOXA10P31260 410 aaPredicted RBP9.96□□□□□ -0.81
SNCA-201ENST00000336904 CRKP46108 304 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 JAG1P78504 1218 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 PDE4DQ08499 809 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 NEK8Q86SG6 692 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 C2CD5Q86YS7 1000 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 CDAN1Q8IWY9 1227 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 SP8Q8IXZ3 490 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 TRIML1Q8N9V2 468 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 ANKRD7Q92527 254 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 ZMYND12Q9H0C1 365 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 JMJD4Q9H9V9 463 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 C6orf50Q9HD87 102 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 PARP3Q9Y6F1 533 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 ZNF831Q5JPB2 1677 aa9.96□□□□□ -0.81
SNCA-201ENST00000336904 B4DLN1 442 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 EDIL3O43854 480 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 BMP15O95972 392 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 ERCC5P28715 1186 aaPredicted RBP9.96□□□□□ -0.82
SNCA-201ENST00000336904 LONP1P36776 959 aaKnown RBP9.96□□□□□ -0.82
SNCA-201ENST00000336904 ETF1P62495 437 aaKnown RBP9.96□□□□□ -0.82
SNCA-201ENST00000336904 CDKAL1Q5VV42 579 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 CCDC34Q96HJ3 373 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 CRAMP1Q96RY5 1269 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 CHP1Q99653 195 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 PODXL2Q9NZ53 605 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 TULP1O00294 542 aaPredicted RBP9.96□□□□□ -0.82
SNCA-201ENST00000336904 MARCH6O60337 910 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 SLU7O95391 586 aaKnown RBP9.96□□□□□ -0.82
SNCA-201ENST00000336904 STAT3P40763 770 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 TRAPPC10P48553 1259 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 COPB1P53618 953 aaKnown RBP9.96□□□□□ -0.82
SNCA-201ENST00000336904 SEPT2Q15019 361 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 ECM1Q16610 540 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 IRF2BP1Q8IU81 584 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 TBC1D22AQ8WUA7 517 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 TEKT1Q969V4 418 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 PCMTD1Q96MG8 357 aaPredicted RBP9.96□□□□□ -0.82
SNCA-201ENST00000336904 SLF1Q9BQI6 1058 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 MMTAG2Q9BU76 263 aaKnown RBP9.96□□□□□ -0.82
SNCA-201ENST00000336904 ZNF287Q9HBT7 754 aa9.96□□□□□ -0.82
SNCA-201ENST00000336904 NPHP3-ACAD11A0A0J9YXS1 232 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 KLRC4O43908 158 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 PLCG2P16885 1265 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 TCP11X2Q5H9J9 407 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 SLC27A3Q5K4L6 730 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 ZNF658Q5TYW1 1059 aaPredicted RBP9.95□□□□□ -0.82
SNCA-201ENST00000336904 ANKS1AQ92625 1134 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 SPZ1Q9BXG8 430 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 COA1Q9GZY4 146 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 TCP11L1Q9NUJ3 509 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 RNF216Q9NWF9 866 aaPredicted RBP9.95□□□□□ -0.82
SNCA-201ENST00000336904 PSDA5PKW4 1024 aaPredicted RBP9.95□□□□□ -0.82
SNCA-201ENST00000336904 ARHGAP6O43182 974 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 ECE2O60344 883 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 EEF2P13639 858 aaKnown RBP9.95□□□□□ -0.82
SNCA-201ENST00000336904 ADCY7P51828 1080 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 ERVK-24P63145 666 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 CALCRLQ16602 461 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 SH3BP5LQ7L8J4 393 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 CCDC155Q8N6L0 562 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 RGS22Q8NE09 1264 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 CCDC12Q8WUD4 166 aaPredicted RBP9.95□□□□□ -0.82
SNCA-201ENST00000336904 CCDC94Q9BW85 323 aaPredicted RBP9.95□□□□□ -0.82
SNCA-201ENST00000336904 ZHX3Q9H4I2 956 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 PUF60Q9UHX1 559 aaKnown RBP9.95□□□□□ -0.82
SNCA-201ENST00000336904 ANKRD31Q8N7Z5 1873 aa9.95□□□□□ -0.82
SNCA-201ENST00000336904 TCP10L2B9ZVM9 353 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 C21orf2O43822 256 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 SEC31AO94979 1220 aaKnown RBP9.94□□□□□ -0.82
SNCA-201ENST00000336904 TTLL1O95922 423 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 HOXA13P31271 388 aaPredicted RBP9.94□□□□□ -0.82
SNCA-201ENST00000336904 UBXN2AP68543 259 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 GABPAQ06546 454 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 ARHGAP29Q52LW3 1261 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 HINFPQ9BQA5 517 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 FGFBP2Q9BYJ0 223 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 BCAS3Q9H6U6 928 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 SH3GLB2Q9NR46 395 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 LRWD1Q9UFC0 647 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 ZBTB12Q9Y330 459 aaPredicted RBP9.94□□□□□ -0.82
SNCA-201ENST00000336904 MFAP3LO75121 409 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 RAD17O75943 681 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 NPR1P16066 1061 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 FILIP1LQ4L180 1135 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 TEX35Q5T0J7 233 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 ARL6IP4Q66PJ3 421 aaKnown RBP9.94□□□□□ -0.82
SNCA-201ENST00000336904 ANKRD40Q6AI12 368 aa9.94□□□□□ -0.82
SNCA-201ENST00000336904 C15orf52Q6ZUT6 534 aaKnown RBP9.94□□□□□ -0.82
SNCA-201ENST00000336904 TRMT1LQ7Z2T5 733 aaKnown RBP9.94□□□□□ -0.82
SNCA-201ENST00000336904 TMX4Q9H1E5 349 aaPredicted RBP9.94□□□□□ -0.82
SNCA-201ENST00000336904 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.94□□□□□ -0.82
SNCA-201ENST00000336904 SMCHD1A6NHR9 2005 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms