RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FNBP1Q96RU3 617 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 MLXIPQ9HAP2 919 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 PHLPP2Q6ZVD8 1323 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 EXOC3O60645 756 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 EPB41P11171 864 aaKnown RBP7.64□□□□□ -1.19
SF3B1-201ENST00000335508 GAP43P17677 238 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 MCM3P25205 808 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 NR5A1Q13285 461 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 NCAPH2Q6IBW4 605 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 ZBTB8OSQ8IWT0 167 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 MICALL2Q8IY33 904 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 PAGR1Q9BTK6 254 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 CEP83Q9Y592 693 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 ZHX2Q9Y6X8 837 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 CACNB3P54284 484 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 NLRP12P59046 1061 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 QRICH1Q2TAL8 776 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 STOX1Q6ZVD7 989 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 TMTC1Q8IUR5 882 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 GPKOWQ92917 476 aaPredicted RBP eCLIP7.64□□□□□ -1.193e-8■■■□□ 18.6
SF3B1-201ENST00000335508 IMPACTQ9P2X3 320 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 TBX3O15119 743 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 MAFGO15525 162 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 USP8P40818 1118 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 LRCH2Q5VUJ6 765 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 MCPH1Q8NEM0 835 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 FAM167AQ96KS9 214 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 SEPT11Q9NVA2 429 aaKnown RBP7.64□□□□□ -1.19
SF3B1-201ENST00000335508 BIN2Q9UBW5 565 aaPredicted RBP7.64□□□□□ -1.19
SF3B1-201ENST00000335508 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.64□□□□□ -1.195e-8■□□□□ 9.2
SF3B1-201ENST00000335508 PVALEFA0A1B0GWK0 134 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 TESPA1A2RU30 521 aaPredicted RBP7.64□□□□□ -1.19
SF3B1-201ENST00000335508 CTNND1O60716 968 aaKnown RBP7.64□□□□□ -1.19
SF3B1-201ENST00000335508 NDUFB10O96000 172 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 ANKRD13AQ8IZ07 590 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 IGDCC4Q8TDY8 1250 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 CPLX3Q8WVH0 158 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 SLF1Q9BQI6 1058 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 BARHL2Q9NY43 387 aa7.64□□□□□ -1.19
SF3B1-201ENST00000335508 PSDA5PKW4 1024 aaPredicted RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 STAT3P40763 770 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 CDC42EP5Q6NZY7 148 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 PAF1Q8N7H5 531 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 DHTKD1Q96HY7 919 aaPredicted RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 NOX5Q96PH1 765 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 DEFB129Q9H1M3 183 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 ZSWIM4Q9H7M6 989 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 HOMER2Q9NSB8 354 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 ZNF70Q9UC06 446 aaPredicted RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 BRPF3Q9ULD4 1205 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 TACC1O75410 805 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 CYP2D6P10635 497 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 EEF1GP26641 437 aaKnown RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 STX17P56962 302 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 CHMP4BP1P59074 171 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 DDX25Q9UHL0 483 aaKnown RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 MED1Q15648 1581 aaPredicted RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 USP17L15C9J2P7 530 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 USP17L13C9JLJ4 530 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 USP17L11C9JVI0 530 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 USP17L18D6R9N7 530 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 USP17L22D6RA61 530 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 USP17L17D6RBQ6 530 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 USP17L19D6RCP7 530 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 USP17L20D6RJB6 530 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 EEF2P13639 858 aaKnown RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 USP17L24Q0WX57 530 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 STRN3Q13033 797 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 TKFCQ3LXA3 575 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 ARHGEF16Q5VV41 709 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 SPATA1Q5VX52 437 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 TXNRD3Q86VQ6 643 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 GPR101Q96P66 508 aaPredicted RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 DPP9Q86TI2 863 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 PRIMPOLQ96LW4 560 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 CCSER1Q9C0I3 900 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 LRRC4BQ9NT99 713 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 RNF146Q9NTX7 359 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 SERTAD1Q9UHV2 236 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 PTPRZ1P23471 2315 aaPredicted RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 N4BP1O75113 896 aaKnown RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 VEGFAP15692 232 aaPredicted RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 KRT9P35527 623 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 SNX16P57768 344 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 ARHGAP4P98171 946 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 SETQ01105 290 aaPredicted RBP7.63□□□□□ -1.19
SF3B1-201ENST00000335508 SP4Q02446 784 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 PDIA5Q14554 519 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 FAM160B1Q5W0V3 765 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 DRC1Q96MC2 740 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 ADPGKQ9BRR6 497 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 IFNKQ9P0W0 207 aa7.63□□□□□ -1.19
SF3B1-201ENST00000335508 SPDYE2BA6NHP3 402 aa7.62□□□□□ -1.19
SF3B1-201ENST00000335508 SPDYE6P0CI01 402 aa7.62□□□□□ -1.19
SF3B1-201ENST00000335508 PSMD2Q13200 908 aa7.62□□□□□ -1.19
SF3B1-201ENST00000335508 NEDD9Q14511 834 aa7.62□□□□□ -1.19
SF3B1-201ENST00000335508 CEP55Q53EZ4 464 aa7.62□□□□□ -1.19
SF3B1-201ENST00000335508 ENOX1Q8TC92 643 aaKnown RBP7.62□□□□□ -1.19
SF3B1-201ENST00000335508 FERMT1Q9BQL6 677 aa7.62□□□□□ -1.19
SF3B1-201ENST00000335508 EPB41L4AQ9HCS5 686 aaPredicted RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms