RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CCL15Q16663 113 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF530Q6P9A1 599 aaPredicted RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 TMEM92Q6UXU6 159 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF598Q86UK7 904 aaKnown RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 RIOX2Q8IUF8 465 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 PHTF2Q8N3S3 785 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 RAET1EQ8TD07 263 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 NKD2Q969F2 451 aaPredicted RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 PLEKHF1Q96S99 279 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 GPR20Q99678 358 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 NUDT12Q9BQG2 462 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 NOC4LQ9BVI4 516 aaKnown RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 VTA1Q9NP79 307 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 TMPRSS4Q9NRS4 437 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF70Q9UC06 446 aaPredicted RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 DPP7Q9UHL4 492 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 ANGPTL2Q9UKU9 493 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 PHTF1Q9UMS5 762 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 DAGLAQ9Y4D2 1042 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 CSADQ9Y600 493 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 CLUHO75153 1309 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 UMODL1Q5DID0 1318 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 HEATR9A2RTY3 570 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 KBTBD13C9JR72 458 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 FOSL1P15407 271 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 FGFR2P21802 821 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 CALD1Q05682 793 aaKnown RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 NONOQ15233 471 aaKnown RBP eCLIP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 LCE2CQ5TA81 110 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 CWF19L1Q69YN2 538 aaKnown RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 C15orf39Q6ZRI6 1047 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 KRT25Q7Z3Z0 450 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF804AQ7Z570 1209 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 PLEKHH3Q7Z736 793 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 IL27Q8NEV9 243 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 REPS2Q8NFH8 660 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 SPOCK2Q92563 424 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 CHMP4CQ96CF2 233 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 TGS1Q96RS0 853 aaKnown RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 SORCS3Q9UPU3 1222 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 SSX2IPQ9Y2D8 614 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 COG6Q9Y2V7 657 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 SH3BP1Q9Y3L3 701 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF536O15090 1300 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 CXorf51AA0A1B0GTR3 108 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 F5H6K3 240 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 STAM2O75886 525 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 SASH1O94885 1247 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 TBC1D8O95759 1140 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PYGBP11216 843 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 GP1BBP13224 206 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PTGER4P35408 488 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 GPSM2P81274 684 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 FAAP100Q0VG06 881 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PAK2Q13177 524 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PTK7Q13308 1070 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 VGLL4Q14135 290 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 TAF7Q15545 349 aaPredicted RBP2.06□□□□□ -2.08
LINC00643-201ENST00000334389 DUSP6Q16828 381 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 ANGEL2Q5VTE6 544 aaKnown RBP2.06□□□□□ -2.08
LINC00643-201ENST00000334389 RUBCNQ92622 972 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 OSBP2Q969R2 916 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 TRIB1Q96RU8 372 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 ZIC5Q96T25 663 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PBX4Q9BYU1 374 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 EPHX3Q9H6B9 360 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 USP35Q9P2H5 1018 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 POLLQ9UGP5 575 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 FBXO40Q9UH90 709 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 CD207Q9UJ71 328 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PCDHB8Q9UN66 801 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 GPSM3Q9Y4H4 160 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PTPRCP08575 1304 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 TRIM43BA6NCK2 446 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 ADM5C9JUS6 153 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF865P0CJ78 1059 aaPredicted RBP2.06□□□□□ -2.08
LINC00643-201ENST00000334389 CEACAM1P13688 526 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 EDNRBP24530 442 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 HTRA3P83110 453 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 TAP1Q03518 808 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PDE4BQ07343 736 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 TBC1D8BQ0IIM8 1120 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 SPNS3Q6ZMD2 512 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PPFIBP1Q86W92 1011 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 FAM43AQ8N2R8 423 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 VGLL2Q8N8G2 317 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 SPATA3Q8NHX4 192 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 CCDC26Q8TAB7 109 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 WBP2Q969T9 261 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 TRIM43Q96BQ3 446 aaPredicted RBP2.06□□□□□ -2.08
LINC00643-201ENST00000334389 CENPTQ96BT3 561 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 MBOAT7Q96N66 472 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 RAD9AQ99638 391 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PLXNB3Q9ULL4 1909 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 NOTCH2Q04721 2471 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 SHTN1A0MZ66 631 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PDHXO00330 501 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PLA2G2AP14555 144 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 SREBF1P36956 1147 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 MCAMP43121 646 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms