RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 TTBK2Q6IQ55 1244 aa16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 ZNF622Q969S3 477 aaKnown RBP eCLIP16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 AK8Q96MA6 479 aa16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 MFAP3LO75121 409 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 PDE6BP35913 854 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 TXKP42681 527 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 FXR1P51114 621 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 ADCY7P51828 1080 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 ZNF543Q08ER8 600 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 KCNB1Q14721 858 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 MASTLQ96GX5 879 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 NRXN2Q9P2S2 1712 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 SLC16A2P36021 539 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 SPAG1Q07617 926 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 HHIPL2Q6UWX4 724 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 RAD9BQ6WBX8 426 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 IRF2BP1Q8IU81 584 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 ADGRF4Q8IZF3 695 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 WDR24Q96S15 920 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 MMTAG2Q9BU76 263 aaKnown RBP16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 JMJD4Q9H9V9 463 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 SWAP70Q9UH65 585 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 PARP3Q9Y6F1 533 aa16.72■□□□□ 0.27
CLCNKA-201ENST00000331433 FAM196BA6NMK8 535 aa16.71■□□□□ 0.27
CLCNKA-201ENST00000331433 SLC37A4O43826 429 aa16.71■□□□□ 0.27
CLCNKA-201ENST00000331433 PPP1R11O60927 126 aaPredicted RBP16.71■□□□□ 0.27
CLCNKA-201ENST00000331433 RHOBTB3O94955 611 aa16.71■□□□□ 0.27
CLCNKA-201ENST00000331433 TDP2O95551 362 aa16.71■□□□□ 0.27
CLCNKA-201ENST00000331433 APBA3O96018 575 aa16.71■□□□□ 0.27
CLCNKA-201ENST00000331433 KIAA0825Q8IV33 1275 aa16.71■□□□□ 0.27
CLCNKA-201ENST00000331433 TMX4Q9H1E5 349 aaPredicted RBP16.71■□□□□ 0.27
CLCNKA-201ENST00000331433 MRPL44Q9H9J2 332 aaKnown RBP16.71■□□□□ 0.27
CLCNKA-201ENST00000331433 hCG_1984214I3L0E3 225 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 RNF225M0QZC1 329 aaPredicted RBP16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 EDIL3O43854 480 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 URI1O94763 535 aaPredicted RBP16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 MYL1P05976 194 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 CRKP46108 304 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 GNG11P61952 73 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 TCP10Q12799 353 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 SHROOM1Q2M3G4 852 aaPredicted RBP16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 GLIPR1L2Q4G1C9 344 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 KCTD1Q719H9 257 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 ZNF713Q8N859 430 aaPredicted RBP16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 GIMAP8Q8ND71 665 aaPredicted RBP16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 ANKRD20A12PQ8NF67 263 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 TRIM9Q9C026 710 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 CGNQ9P2M7 1197 aaKnown RBP16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 ZNF219Q9P2Y4 722 aaPredicted RBP16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 ITIH6Q6UXX5 1313 aa16.71■□□□□ 0.26
CLCNKA-201ENST00000331433 SPDYE4A6NLX3 237 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 H7C1D1 291 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 HLA-DOAP06340 250 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 CALCRLQ16602 461 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 UBE2SQ16763 222 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 CCDC96Q2M329 555 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 EEF2KMTQ96G04 330 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 DNAJC18Q9H819 358 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 A0A0U1RQJ8 604 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 ASIC1P78348 528 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 ERCC6LQ2NKX8 1250 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 CNGA4Q8IV77 575 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 ATRIPQ8WXE1 791 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 TRIM47Q96LD4 638 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 CUEDC2Q9H467 287 aa16.7■□□□□ 0.26
CLCNKA-201ENST00000331433 MYH4Q9Y623 1939 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 PNMA6FA0A0J9YX94 578 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 GOLGA6L9A6NEM1 432 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 PSMA7O14818 248 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 RAD21O60216 631 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 TNNI2P48788 182 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 UBXN1Q04323 297 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 MTMR9Q96QG7 549 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 SRRTQ9BXP5 876 aaKnown RBP16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 USP17L10C9JJH3 530 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 CCDC175P0C221 793 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 PDE4DQ08499 809 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 STK4Q13043 487 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 STIM1Q13586 685 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 NAA15Q9BXJ9 866 aaKnown RBP16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 IRX2Q9BZI1 471 aaPredicted RBP16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 MAGEF1Q9HAY2 307 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 LZTFL1Q9NQ48 299 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 ADGRG1Q9Y653 693 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 MYO3BQ8WXR4 1341 aa16.69■□□□□ 0.26
CLCNKA-201ENST00000331433 FCER1AP12319 257 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 CBX1P83916 185 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 NUP88Q99567 741 aaPredicted RBP16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 EXOC1Q9NV70 894 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 LRWD1Q9UFC0 647 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 POTEMA6NI47 508 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 PES1O00541 588 aaKnown RBP16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 PLSCR1O15162 318 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 TPM1P09493 284 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 RBM5P52756 815 aaKnown RBP eCLIP16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 TTI2Q6NXR4 508 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 FBXO38Q6PIJ6 1188 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 PODNQ7Z5L7 613 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 HPS3Q969F9 1004 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms