RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ADAMTS3O15072 1205 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 MRPL12P52815 198 aaKnown RBP11.47□□□□□ -0.57
HMGB3-201ENST00000325307 USP17L24Q0WX57 530 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 STK38Q15208 465 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 NOM1Q5C9Z4 860 aaKnown RBP11.47□□□□□ -0.57
HMGB3-201ENST00000325307 ATL3Q6DD88 541 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 GRPEL1Q9HAV7 217 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 CCPG1Q9ULG6 757 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 OTOFQ9HC10 1997 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 ESYT2A0FGR8 921 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 HUNKP57058 714 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 UBE2SQ16763 222 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 RILPL1Q5EBL4 403 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 SH3D19Q5HYK7 790 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 TREML2Q5T2D2 321 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 CAVIN1Q6NZI2 390 aaKnown RBP11.46□□□□□ -0.57
HMGB3-201ENST00000325307 DAGLBQ8NCG7 672 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 ATG4CQ96DT6 458 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 TMEM63CQ9P1W3 806 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 PCDHA6Q9UN73 950 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 PCDHA8Q9Y5H6 950 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 CLIC4Q9Y696 253 aa11.46□□□□□ -0.57
HMGB3-201ENST00000325307 COG2Q14746 738 aa11.46□□□□□ -0.58
HMGB3-201ENST00000325307 ZSCAN23Q3MJ62 389 aa11.46□□□□□ -0.58
HMGB3-201ENST00000325307 EARS2Q5JPH6 523 aaKnown RBP11.46□□□□□ -0.58
HMGB3-201ENST00000325307 CST9Q5W186 159 aa11.46□□□□□ -0.58
HMGB3-201ENST00000325307 ANO1Q5XXA6 986 aa11.46□□□□□ -0.58
HMGB3-201ENST00000325307 LEO1Q8WVC0 666 aaPredicted RBP11.46□□□□□ -0.58
HMGB3-201ENST00000325307 A0A0G2JLL6 359 aaPredicted RBP11.46□□□□□ -0.58
HMGB3-201ENST00000325307 IRX3P78415 501 aaPredicted RBP11.46□□□□□ -0.58
HMGB3-201ENST00000325307 SNAPC2Q13487 334 aa11.46□□□□□ -0.58
HMGB3-201ENST00000325307 CATSPERGQ6ZRH7 1159 aa11.46□□□□□ -0.58
HMGB3-201ENST00000325307 PRRT2Q7Z6L0 340 aaPredicted RBP11.46□□□□□ -0.58
HMGB3-201ENST00000325307 AGBL1Q96MI9 1066 aa11.46□□□□□ -0.58
HMGB3-201ENST00000325307 RAVER2Q9HCJ3 691 aaKnown RBP11.46□□□□□ -0.58
HMGB3-201ENST00000325307 RIC8AQ9NPQ8 531 aa11.46□□□□□ -0.58
HMGB3-201ENST00000325307 HOMER2Q9NSB8 354 aa11.46□□□□□ -0.58
HMGB3-201ENST00000325307 GADD45BO75293 160 aaPredicted RBP11.45□□□□□ -0.58
HMGB3-201ENST00000325307 KRT25Q7Z3Z0 450 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 TNFRSF25Q93038 417 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 GLT8D2Q9H1C3 349 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 RNF216Q9NWF9 866 aaPredicted RBP11.45□□□□□ -0.58
HMGB3-201ENST00000325307 TMEM260Q9NX78 707 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 PAPPA2Q9BXP8 1791 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 UNCXA6NJT0 531 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 ME1P48163 572 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 PROCA1Q8NCQ7 364 aaPredicted RBP11.45□□□□□ -0.58
HMGB3-201ENST00000325307 HOXC10Q9NYD6 342 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 RTEL1Q9NZ71 1219 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 KCNH4Q9UQ05 1017 aa11.45□□□□□ -0.58
HMGB3-201ENST00000325307 VWA5AO00534 786 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 ALAS1P13196 640 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 GJA5P36382 358 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 ZNF445P59923 1031 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 PLS1Q14651 629 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 NONOQ15233 471 aaKnown RBP eCLIP11.44□□□□□ -0.58
HMGB3-201ENST00000325307 INF2Q27J81 1249 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 USP17L6PQ6QN14 398 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 FASTKD5Q7L8L6 764 aaKnown RBP11.44□□□□□ -0.58
HMGB3-201ENST00000325307 WNK4Q96J92 1243 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 PGBD1Q96JS3 809 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 SLC38A10Q9HBR0 1119 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 POLR3EQ9NVU0 708 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 MRPL11Q9Y3B7 192 aaKnown RBP11.44□□□□□ -0.58
HMGB3-201ENST00000325307 ICAM1P05362 532 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 DSG3P32926 999 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 TMEM87AQ8NBN3 555 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 SMC1BQ8NDV3 1235 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 PHIPQ8WWQ0 1821 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 CFBP00751 764 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 FDX1P10109 184 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 MRE11P49959 708 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 TOB1P50616 345 aaPredicted RBP11.44□□□□□ -0.58
HMGB3-201ENST00000325307 TTC38Q5R3I4 469 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 PCDHB6Q9Y5E3 794 aa11.44□□□□□ -0.58
HMGB3-201ENST00000325307 SPTLC2O15270 562 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 MARCKSP29966 332 aaPredicted RBP11.43□□□□□ -0.58
HMGB3-201ENST00000325307 HOXA13P31271 388 aaPredicted RBP11.43□□□□□ -0.58
HMGB3-201ENST00000325307 ZNF174Q15697 407 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 AGTPBP1Q9UPW5 1226 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 ABCB11O95342 1321 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 KIF3CO14782 793 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 YEATS4O95619 227 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 MCM7P33993 719 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 PABPC4Q13310 644 aaKnown RBP eCLIP11.43□□□□□ -0.587e-7■■■■□ 20.5
HMGB3-201ENST00000325307 LINC00301Q8NCQ3 95 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 KCNG4Q8TDN1 519 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 CEP131Q9UPN4 1083 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 SPDYE16A6NNV3 312 aaPredicted RBP11.43□□□□□ -0.58
HMGB3-201ENST00000325307 M0R2N6 131 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 ZNF157P51786 506 aaPredicted RBP11.43□□□□□ -0.58
HMGB3-201ENST00000325307 FCHSD1Q86WN1 690 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 TBCKQ8TEA7 893 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 RCOR1Q9UKL0 485 aa11.43□□□□□ -0.58
HMGB3-201ENST00000325307 SPDYE3A6NKU9 549 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 CETPP11597 493 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 NASPP49321 788 aaPredicted RBP11.42□□□□□ -0.58
HMGB3-201ENST00000325307 GTF2A2P52657 109 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 UBE2HP62256 183 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 LETM2Q2VYF4 491 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms