RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 KIF4AO95239 1232 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 PLCD4Q9BRC7 762 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 DIP2BQ9P265 1576 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 ANKRD62A6NC57 917 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 CSF1RP07333 972 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 TNFAIP3P21580 790 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 POLR2FP61218 127 aaKnown RBP16.3■□□□□ 0.2
TCOF1-201ENST00000323668 RASSF7Q02833 373 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 TRAPPC3LQ5T215 181 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 CEP57Q86XR8 500 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 ZNF219Q9P2Y4 722 aaPredicted RBP16.3■□□□□ 0.2
TCOF1-201ENST00000323668 LGALS16A8MUM7 142 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 MSL1Q68DK7 614 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 TRIM31Q9BZY9 425 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 PARP3Q9Y6F1 533 aa16.3■□□□□ 0.2
TCOF1-201ENST00000323668 ZNF804BA4D1E1 1349 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 MAN2A1Q16706 1144 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 PRCPP42785 496 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 ZRSR2Q15696 482 aaKnown RBP16.29■□□□□ 0.2
TCOF1-201ENST00000323668 LARP4BQ92615 738 aaKnown RBP16.29■□□□□ 0.2
TCOF1-201ENST00000323668 MTUS1Q9ULD2 1270 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 KCNK3O14649 394 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 USP37Q86T82 979 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 SENP2Q9HC62 589 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 KDM3AQ9Y4C1 1321 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 ACTN4O43707 911 aaKnown RBP16.29■□□□□ 0.2
TCOF1-201ENST00000323668 PLCG1P19174 1290 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 ATP1A2P50993 1020 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 NR1I3Q14994 352 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 USP49Q70CQ1 688 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 CABS1Q96KC9 395 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 CCDC77Q9BR77 488 aa16.29■□□□□ 0.2
TCOF1-201ENST00000323668 NF2P35240 595 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 SLC1A4P43007 532 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 CCT5P48643 541 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 DGKHQ86XP1 1220 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 SYCE1Q8N0S2 351 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 EZRP15311 586 aaKnown RBP16.28■□□□□ 0.2
TCOF1-201ENST00000323668 GUCY2DQ02846 1103 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 CALCOCO2Q13137 446 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 CEP85LQ5SZL2 805 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 GPBP1Q86WP2 473 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 ZNF512BQ96KM6 892 aaPredicted RBP16.28■□□□□ 0.2
TCOF1-201ENST00000323668 PANK4Q9NVE7 773 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 ARMCX3Q9UH62 379 aaPredicted RBP16.28■□□□□ 0.2
TCOF1-201ENST00000323668 PTPAQ15257 358 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 DAAM2Q86T65 1068 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 CCDC25Q86WR0 208 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 SAMD15Q9P1V8 674 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 PNPLA7Q6ZV29 1317 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 EPHB4P54760 987 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 PFKFB3Q16875 520 aaPredicted RBP16.28■□□□□ 0.2
TCOF1-201ENST00000323668 TBC1D22AQ8WUA7 517 aa16.28■□□□□ 0.2
TCOF1-201ENST00000323668 CCNL1Q9UK58 526 aaPredicted RBP16.28■□□□□ 0.2
TCOF1-201ENST00000323668 TRIM49BA6NDI0 452 aa16.27■□□□□ 0.2
TCOF1-201ENST00000323668 USP17L8P0C7I0 530 aa16.27■□□□□ 0.2
TCOF1-201ENST00000323668 FKBP3Q00688 224 aaKnown RBP16.27■□□□□ 0.2
TCOF1-201ENST00000323668 EHHADHQ08426 723 aa16.27■□□□□ 0.2
TCOF1-201ENST00000323668 MTMR3Q13615 1198 aa16.27■□□□□ 0.2
TCOF1-201ENST00000323668 TTC26A0AVF1 554 aa16.27■□□□□ 0.2
TCOF1-201ENST00000323668 XRCC5P13010 732 aaKnown RBP16.27■□□□□ 0.2
TCOF1-201ENST00000323668 EIF4A3P38919 411 aaKnown RBP16.27■□□□□ 0.2
TCOF1-201ENST00000323668 APBA1Q02410 837 aa16.27■□□□□ 0.2
TCOF1-201ENST00000323668 MECOMQ03112 1051 aa16.27■□□□□ 0.2
TCOF1-201ENST00000323668 MFSD14BQ5SR56 506 aa16.27■□□□□ 0.2
TCOF1-201ENST00000323668 TBCKQ8TEA7 893 aa16.27■□□□□ 0.2
TCOF1-201ENST00000323668 ZNF622Q969S3 477 aaKnown RBP eCLIP16.27■□□□□ 0.21e-6■■□□□ 12.3
TCOF1-201ENST00000323668 ADD3Q9UEY8 706 aaKnown RBP16.27■□□□□ 0.2
TCOF1-201ENST00000323668 CYP2C19P33261 490 aa16.27■□□□□ 0.19
TCOF1-201ENST00000323668 C2orf54Q08AI8 447 aa16.27■□□□□ 0.19
TCOF1-201ENST00000323668 PLS1Q14651 629 aa16.27■□□□□ 0.19
TCOF1-201ENST00000323668 KRT71Q3SY84 523 aa16.27■□□□□ 0.19
TCOF1-201ENST00000323668 REXO1L1PQ8IX06 675 aa16.27■□□□□ 0.19
TCOF1-201ENST00000323668 MRPL44Q9H9J2 332 aaKnown RBP16.27■□□□□ 0.19
TCOF1-201ENST00000323668 E7EVH7 732 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 CXCR5P32302 372 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 ATP2C1P98194 919 aaPredicted RBP16.26■□□□□ 0.19
TCOF1-201ENST00000323668 HOOK3Q86VS8 718 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 RBM17Q96I25 401 aaKnown RBP16.26■□□□□ 0.19
TCOF1-201ENST00000323668 NDST4Q9H3R1 872 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 RIC8AQ9NPQ8 531 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 STK17AQ9UEE5 414 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 HPSEQ9Y251 543 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 FRMPD2Q68DX3 1309 aaPredicted RBP16.26■□□□□ 0.19
TCOF1-201ENST00000323668 PPARDQ03181 441 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 ADAM9Q13443 819 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 PSTPIP2Q9H939 334 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 SWAP70Q9UH65 585 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 CTNNA2P26232 953 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 NCAPHQ15003 741 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 ERFEQ4G0M1 354 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 ELOA2Q8IYF1 753 aaPredicted RBP16.26■□□□□ 0.19
TCOF1-201ENST00000323668 A0A1W2PRG0 241 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 CYP19A1P11511 503 aaPredicted RBP16.26■□□□□ 0.19
TCOF1-201ENST00000323668 H2AFXP16104 143 aaPredicted RBP16.26■□□□□ 0.19
TCOF1-201ENST00000323668 CTNNA1P35221 906 aaKnown RBP16.26■□□□□ 0.19
TCOF1-201ENST00000323668 LIG3P49916 1009 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 SEL1L2Q5TEA6 688 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 SH3GLB2Q9NR46 395 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 FAM184BQ9ULE4 1060 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms