RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ACRBPQ8NEB7 543 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 PIK3R5Q8WYR1 880 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 IFIH1Q9BYX4 1025 aaKnown RBP5.73□□□□□ -1.49
SCN1A-201ENST00000303395 CABP2Q9NPB3 220 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 LRRIQ1Q96JM4 1722 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 KRT15P19012 456 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 BTNL9Q6UXG8 535 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 NEK10Q6ZWH5 1172 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 MIER3Q7Z3K6 550 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 NBPF5PQ86XG9 351 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-201ENST00000303395 CCDC125Q86Z20 511 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 ST13P4Q8IZP2 240 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-201ENST00000303395 FRMD8P1Q9BZ68 369 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-201ENST00000303395 PAG1Q9NWQ8 432 aa5.73□□□□□ -1.49
SCN1A-201ENST00000303395 COL15A1P39059 1388 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ABCA6Q8N139 1617 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 HNRNPRO43390 633 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ACADSP16219 412 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 GCKP35557 465 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ANKRD20A4Q4UJ75 823 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ANKRD20A8PQ5CZ79 823 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ANKRD20A2Q5SQ80 823 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ANKRD20A1Q5TYW2 823 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DTHD1Q6ZMT9 781 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 TMC4Q7Z404 712 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 AGGF1Q8N302 714 aaeCLIP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 TBC1D22AQ8WUA7 517 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 KCNB2Q92953 911 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 PAWRQ96IZ0 340 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 C8orf4Q9NR00 106 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 BIN2Q9UBW5 565 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 MED23Q9ULK4 1368 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ADGRB2O60241 1585 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 PGRMC1O00264 195 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 OCM2P0CE71 109 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 OCMP0CE72 109 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ZBTB41Q5SVQ8 909 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ANKRD20A3Q5VUR7 823 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 CAPRIN2Q6IMN6 1127 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 CC2D1AQ6P1N0 951 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 BCAS4Q8TDM0 211 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 TBX22Q9Y458 520 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ESYT2A0FGR8 921 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 AP3B1O00203 1094 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 TADA3O75528 432 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 SLFN14P0C7P3 912 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 TNFRSF8P28908 595 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 MAPK8IP2Q13387 824 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 NSMCE1Q8WV22 266 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 TNRQ92752 1358 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DCAF5Q96JK2 942 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 PPP1R13BQ96KQ4 1090 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 SERPINI1Q99574 410 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 XAB2Q9HCS7 855 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ZHX2Q9Y6X8 837 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 MROH2AA6NES4 1674 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 KLF18A0A0U1RQI7 1052 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 A0A1B0GW55 424 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DUX4L2P0CJ85 424 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DUX4L3P0CJ86 424 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DUX4L4P0CJ87 422 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DUX4L5P0CJ88 424 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DUX4L6P0CJ89 424 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DUX4L7P0CJ90 424 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 GHRP10912 638 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 PYGBP11216 843 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 KRT3P12035 628 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 HSPA1LP34931 641 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 FBXW4P57775 412 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 SV2BQ7L1I2 683 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 CCDC124Q96CT7 223 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 TMEM60Q9H2L4 133 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 UBN1Q9NPG3 1134 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DUX4Q9UBX2 424 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 USP31Q70CQ4 1352 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 MROH5Q6ZUA9 1318 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 RGS16O15492 202 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 EPB41P11171 864 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 GAP43P17677 238 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ARID5AQ03989 594 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 PATL1Q86TB9 770 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 NOSTRINQ8IVI9 506 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 SGSM3Q96HU1 749 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 PPP1R2P1Q96PQ5 205 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ROPN1BQ9BZX4 212 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ROPN1Q9HAT0 212 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ADAM21Q9UKJ8 722 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 BAG5Q9UL15 447 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 MROH1Q8NDA8 1641 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 SSU72P8A0A1W2PR75 194 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 KIAA0391O15091 583 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 ESRRBO95718 433 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 UBXN1Q04323 297 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DHX34Q14147 1143 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 KPNB1Q14974 876 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 C4orf22Q6V702 233 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 DZIP3Q86Y13 1208 aaKnown RBP5.72□□□□□ -1.49
SCN1A-201ENST00000303395 COG1Q8WTW3 980 aa5.72□□□□□ -1.49
SCN1A-201ENST00000303395 SNX14Q9Y5W7 946 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms