RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 MAGOHBQ96A72 148 aaKnown RBP11.27□□□□□ -0.61
CLDN1-201ENST00000295522 ETAA1Q9NY74 926 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 TRPC6Q9Y210 931 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 SETD1AO15047 1707 aaKnown RBP11.27□□□□□ -0.61
CLDN1-201ENST00000295522 ITIH6Q6UXX5 1313 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 HMGB1P1B2RPK0 211 aaPredicted RBP11.27□□□□□ -0.61
CLDN1-201ENST00000295522 TULP1O00294 542 aaPredicted RBP11.27□□□□□ -0.61
CLDN1-201ENST00000295522 TCP1P17987 556 aaKnown RBP11.27□□□□□ -0.61
CLDN1-201ENST00000295522 WDR59Q6PJI9 974 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 CACNA2D4Q7Z3S7 1137 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 MMGT1Q8N4V1 131 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 NOC4LQ9BVI4 516 aaKnown RBP11.27□□□□□ -0.61
CLDN1-201ENST00000295522 MTMR7Q9Y216 660 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 NCAPD2Q15021 1401 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 PALLDQ8WX93 1383 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 ANO9A1A5B4 782 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 SH2B2O14492 632 aaPredicted RBP11.26□□□□□ -0.61
CLDN1-201ENST00000295522 LGR5O75473 907 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 EHHADHQ08426 723 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 PLCB4Q15147 1175 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 NT5DC1Q5TFE4 455 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 YTHDF3Q7Z739 585 aaKnown RBP11.26□□□□□ -0.61
CLDN1-201ENST00000295522 LIMA1Q9UHB6 759 aaKnown RBP11.26□□□□□ -0.61
CLDN1-201ENST00000295522 TMEM131LA2VDJ0 1609 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 TNRQ92752 1358 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 PDHA1P08559 390 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 XBP1P17861 261 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 STAT6P42226 847 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 RBM5P52756 815 aaKnown RBP eCLIP11.26□□□□□ -0.61
CLDN1-201ENST00000295522 BZW1Q7L1Q6 419 aaKnown RBP11.26□□□□□ -0.61
CLDN1-201ENST00000295522 KIF2BQ8N4N8 673 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 PRCCQ92733 491 aaPredicted RBP11.26□□□□□ -0.61
CLDN1-201ENST00000295522 TUBGCP2Q9BSJ2 902 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 NAPBQ9H115 298 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 EIF4A3P38919 411 aaKnown RBP11.26□□□□□ -0.61
CLDN1-201ENST00000295522 ELF3P78545 371 aaPredicted RBP11.26□□□□□ -0.61
CLDN1-201ENST00000295522 RRAGAQ7L523 313 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 KSR1Q8IVT5 923 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 TTC5Q8N0Z6 440 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 DYDC1Q8WWB3 177 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 TAF4BQ92750 862 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 METTL22Q9BUU2 404 aaPredicted RBP11.26□□□□□ -0.61
CLDN1-201ENST00000295522 PCDHA13Q9Y5I0 950 aa11.26□□□□□ -0.61
CLDN1-201ENST00000295522 A0A0G2JS52 829 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 RNMTO43148 476 aaKnown RBP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 EPB41P11171 864 aaKnown RBP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 SCARF1Q14162 830 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 NBPF20Q3BBV1 942 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 CCDC197Q8NCU1 140 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 APPBP2Q92624 585 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 CCDC47Q96A33 483 aaKnown RBP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 ELAC2Q9BQ52 826 aaKnown RBP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 TSGA10Q9BZW7 698 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 STRN4Q9NRL3 753 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 EXOC1Q9NV70 894 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 RWDD2AQ9UIY3 292 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 PSMA7O14818 248 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 EVI5O60447 810 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 SNUPNO95149 360 aaKnown RBP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 PCK1P35558 622 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 PTGDRQ13258 359 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 CASKIN2Q8WXE0 1202 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 RAPGEF5Q92565 580 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 NUP58Q9BVL2 599 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 DPH5Q9H2P9 285 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 SLC39A2Q9NP94 309 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 NOP53Q9NZM5 478 aaKnown RBP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 FAM237AA0A1B0GTK4 181 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 RTN2O75298 545 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 RPN1P04843 607 aaKnown RBP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 ARID4AP29374 1257 aaPredicted RBP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 KIF11P52732 1056 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 DRP2Q13474 957 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 WTAPQ15007 396 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 MEX3CQ5U5Q3 659 aaKnown RBP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 TOM1L2Q6ZVM7 507 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 MGARPQ8TDB4 240 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 HOOK2Q96ED9 719 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLDN1-201ENST00000295522 ZBTB3Q9H5J0 574 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 NLRC4Q9NPP4 1024 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 SAMD15Q9P1V8 674 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 PHF8Q9UPP1 1060 aa11.25□□□□□ -0.61
CLDN1-201ENST00000295522 LGALS16A8MUM7 142 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 SEMA3EO15041 775 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 RWDD2BP57060 319 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 MXRA7P84157 204 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 ADCY2Q08462 1091 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 ITGB3BPQ13352 177 aaPredicted RBP11.24□□□□□ -0.61
CLDN1-201ENST00000295522 NOX5Q96PH1 765 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 AP1M1Q9BXS5 423 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 DCDC2CA8MYV0 355 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 MINDY4BA8MYZ0 360 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 TRIM37O94972 964 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 RANBP1P43487 201 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 RFX5P48382 616 aaPredicted RBP11.24□□□□□ -0.61
CLDN1-201ENST00000295522 PMS1P54277 932 aaKnown RBP11.24□□□□□ -0.61
CLDN1-201ENST00000295522 GFPT1Q06210 699 aaPredicted RBP11.24□□□□□ -0.61
CLDN1-201ENST00000295522 TAF11Q15544 211 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 AKAP4Q5JQC9 854 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms