RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 KLRC3Q07444 240 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 DLGAP5Q15398 846 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 NELFBQ8WX92 580 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 DHX36Q9H2U1 1008 aaKnown RBP12.95□□□□□ -0.34
CUX1-202ENST00000292538 KANSL2Q9H9L4 492 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 PPP1R3GB7ZBB8 358 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 ASIC1P78348 528 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 QRICH1Q2TAL8 776 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 SH3RF1Q7Z6J0 888 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 TRIML1Q8N9V2 468 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 C7orf43Q8WVR3 580 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 ZFP91Q96JP5 570 aaPredicted RBP12.94□□□□□ -0.34
CUX1-202ENST00000292538 LRWD1Q9UFC0 647 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 ZBTB5O15062 677 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 GTPBP6O43824 516 aaPredicted RBP12.94□□□□□ -0.34
CUX1-202ENST00000292538 IDEP14735 1019 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 PRCPP42785 496 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 ECE1P42892 770 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 NAALADL2Q58DX5 795 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 CEP135Q66GS9 1140 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 CC2D2BQ6DHV5 1058 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 DAGLBQ8NCG7 672 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 LRRC15Q8TF66 581 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 UBE2Q2Q8WVN8 375 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 CCDC17Q96LX7 622 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 IMPACTQ9P2X3 320 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 SERPINA10Q9UK55 444 aa12.94□□□□□ -0.34
CUX1-202ENST00000292538 IGKV6D-41A0A0C4DH26 115 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 HOXA13P31271 388 aaPredicted RBP12.93□□□□□ -0.34
CUX1-202ENST00000292538 BAG6P46379 1132 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 RAD51AP2Q09MP3 1159 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 RRP1BQ14684 758 aaKnown RBP12.93□□□□□ -0.34
CUX1-202ENST00000292538 CDC37Q16543 378 aaPredicted RBP12.93□□□□□ -0.34
CUX1-202ENST00000292538 KMT5BQ4FZB7 885 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 GPATCH4Q5T3I0 446 aaKnown RBP12.93□□□□□ -0.34
CUX1-202ENST00000292538 SPATA1Q5VX52 437 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 VSTM4Q8IW00 320 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 CCDC150Q8NCX0 1101 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 SPATA20Q8TB22 786 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 CUL5Q93034 780 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 TMEM39BQ9GZU3 492 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 TAB2Q9NYJ8 693 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 SHTN1A0MZ66 631 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 CCDC93Q567U6 631 aa12.93□□□□□ -0.34
CUX1-202ENST00000292538 N4BP3O15049 544 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 ZBTB22O15209 634 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 NT5C2P49902 561 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 MRPL12P52815 198 aaKnown RBP12.92□□□□□ -0.34
CUX1-202ENST00000292538 PAK1Q13153 545 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 FCHSD1Q86WN1 690 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 CALML4Q96GE6 196 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 DDX25Q9UHL0 483 aaKnown RBP12.92□□□□□ -0.34
CUX1-202ENST00000292538 ERCC5P28715 1186 aaPredicted RBP12.92□□□□□ -0.34
CUX1-202ENST00000292538 PDE4DQ08499 809 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 CCAR2Q8N163 923 aaKnown RBP12.92□□□□□ -0.34
CUX1-202ENST00000292538 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.92□□□□□ -0.347e-6■□□□□ 9.2
CUX1-202ENST00000292538 V9GYY5 206 aaPredicted RBP12.92□□□□□ -0.34
CUX1-202ENST00000292538 DDX60LQ5H9U9 1706 aaKnown RBP12.92□□□□□ -0.34
CUX1-202ENST00000292538 NDUFB10O96000 172 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 FCER1AP12319 257 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 MCM6Q14566 821 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 TMEM266Q2M3C6 531 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 E4F1Q66K89 784 aaPredicted RBP12.92□□□□□ -0.34
CUX1-202ENST00000292538 SPECC1LQ69YQ0 1117 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 CCDC174Q6PII3 467 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 SIAH1Q8IUQ4 282 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 ELOA2Q8IYF1 753 aaPredicted RBP12.92□□□□□ -0.34
CUX1-202ENST00000292538 SUPT20HQ8NEM7 779 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 ACER1Q8TDN7 264 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 SNX29Q8TEQ0 813 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 NUDT12Q9BQG2 462 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 IDI2Q9BXS1 227 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 ZHX3Q9H4I2 956 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 SLC39A2Q9NP94 309 aa12.92□□□□□ -0.34
CUX1-202ENST00000292538 NAV1Q8NEY1 1877 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 ANKRD31Q8N7Z5 1873 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 SNHG28P0DPA3 235 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 ZNF18P17022 549 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 PMS1P54277 932 aaKnown RBP12.91□□□□□ -0.34
CUX1-202ENST00000292538 TMEM179Q6ZVK1 233 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 IGSF22Q8N9C0 903 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 KIFC2Q96AC6 838 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 TRIM47Q96LD4 638 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 DESI2Q9BSY9 194 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 MAST2Q6P0Q8 1798 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 SLX4Q8IY92 1834 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 A0A1W2PRG0 241 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 UBXN2AP68543 259 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 FILIP1LQ4L180 1135 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 RSBN1LQ6PCB5 846 aaPredicted RBP12.91□□□□□ -0.34
CUX1-202ENST00000292538 PPFIBP1Q86W92 1011 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 GPIHBP1Q8IV16 184 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 PYM1Q9BRP8 204 aaKnown RBP12.91□□□□□ -0.34
CUX1-202ENST00000292538 EXOC1Q9NV70 894 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 RMND1Q9NWS8 449 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 HDAC9Q9UKV0 1011 aa12.91□□□□□ -0.34
CUX1-202ENST00000292538 LAMB1P07942 1786 aa12.9□□□□□ -0.34
CUX1-202ENST00000292538 CACNB1Q02641 598 aaPredicted RBP12.9□□□□□ -0.34
CUX1-202ENST00000292538 NAA30Q147X3 362 aaPredicted RBP12.9□□□□□ -0.34
CUX1-202ENST00000292538 ZNF658Q5TYW1 1059 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms