RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 CUL5Q93034 780 aa21.68■■□□□ 1.06
PDLIM3-202ENST00000284770 HHIPL1Q96JK4 782 aa21.68■■□□□ 1.06
PDLIM3-202ENST00000284770 P2RX7Q99572 595 aaKnown RBP21.68■■□□□ 1.06
PDLIM3-202ENST00000284770 RAVER2Q9HCJ3 691 aaKnown RBP21.68■■□□□ 1.06
PDLIM3-202ENST00000284770 CCPG1Q9ULG6 757 aa21.68■■□□□ 1.06
PDLIM3-202ENST00000284770 ATP2A1O14983 1001 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 OSBPP22059 807 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 MYSM1Q5VVJ2 828 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 LBX2Q6XYB7 198 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 BRI3BPQ8WY22 251 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 LMBRD1Q9NUN5 540 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 PCDHA6Q9UN73 950 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 SLC45A1Q9Y2W3 748 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 MRPL11Q9Y3B7 192 aaKnown RBP21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 PCDHA8Q9Y5H6 950 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 ABCB11O95342 1321 aa21.67■■□□□ 1.06
PDLIM3-202ENST00000284770 TAL1P17542 331 aaPredicted RBP21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 REXO1Q8N1G1 1221 aaKnown RBP21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 CNPY2Q9Y2B0 182 aa21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 SLC10A3P09131 477 aa21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 PTMSP20962 102 aa21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 TMEM132BQ14DG7 1078 aa21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 ATL3Q6DD88 541 aa21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 ANKRD23Q86SG2 305 aa21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 MB21D1Q8N884 522 aa21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 CCDC102AQ96A19 550 aa21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 ZNF214Q9UL59 606 aaPredicted RBP21.66■■□□□ 1.06
PDLIM3-202ENST00000284770 TESPA1A2RU30 521 aaPredicted RBP21.65■■□□□ 1.06
PDLIM3-202ENST00000284770 BTBD19C9JJ37 291 aa21.65■■□□□ 1.06
PDLIM3-202ENST00000284770 HERVK_113P62684 666 aa21.65■■□□□ 1.06
PDLIM3-202ENST00000284770 EARS2Q5JPH6 523 aaKnown RBP21.65■■□□□ 1.06
PDLIM3-202ENST00000284770 TEX2Q8IWB9 1127 aa21.65■■□□□ 1.06
PDLIM3-202ENST00000284770 TMEM87AQ8NBN3 555 aa21.65■■□□□ 1.06
PDLIM3-202ENST00000284770 RASGRP4Q8TDF6 673 aa21.65■■□□□ 1.06
PDLIM3-202ENST00000284770 ZNF396Q96N95 335 aaPredicted RBP21.65■■□□□ 1.06
PDLIM3-202ENST00000284770 PNMA3Q9UL41 463 aa21.65■■□□□ 1.06
PDLIM3-202ENST00000284770 OPLAHO14841 1288 aa21.64■■□□□ 1.06
PDLIM3-202ENST00000284770 CLK2P49760 499 aaKnown RBP21.64■■□□□ 1.06
PDLIM3-202ENST00000284770 KRT85P78386 507 aa21.64■■□□□ 1.06
PDLIM3-202ENST00000284770 POTEEQ6S8J3 1075 aa21.64■■□□□ 1.06
PDLIM3-202ENST00000284770 BIN2Q9UBW5 565 aaPredicted RBP21.64■■□□□ 1.06
PDLIM3-202ENST00000284770 MANSC4A6NHS7 340 aaPredicted RBP21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 PDHXO00330 501 aa21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 MEIS2O14770 477 aa21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 PRPF40AO75400 957 aaKnown RBP21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 NOM1Q5C9Z4 860 aaKnown RBP21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 RILPL1Q5EBL4 403 aa21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 PIK3AP1Q6ZUJ8 805 aa21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 TEX13BQ9BXU2 312 aa21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 GDPD2Q9HCC8 539 aa21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 TFIP11Q9UBB9 837 aaKnown RBP21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 CFAP45Q9UL16 551 aa21.64■■□□□ 1.05
PDLIM3-202ENST00000284770 CCDC194A0A1B0GVG4 234 aa21.63■■□□□ 1.05
PDLIM3-202ENST00000284770 FAM205CA6NFA0 338 aa21.63■■□□□ 1.05
PDLIM3-202ENST00000284770 FAM155AB1AL88 458 aaPredicted RBP21.63■■□□□ 1.05
PDLIM3-202ENST00000284770 ALAS1P13196 640 aa21.63■■□□□ 1.05
PDLIM3-202ENST00000284770 NCLP19338 710 aaKnown RBP21.63■■□□□ 1.05
PDLIM3-202ENST00000284770 UBE2SQ16763 222 aa21.63■■□□□ 1.05
PDLIM3-202ENST00000284770 USP17L6PQ6QN14 398 aa21.63■■□□□ 1.05
PDLIM3-202ENST00000284770 KRT25Q7Z3Z0 450 aa21.63■■□□□ 1.05
PDLIM3-202ENST00000284770 PTPN18Q99952 460 aa21.63■■□□□ 1.05
PDLIM3-202ENST00000284770 PIK3CDO00329 1044 aa21.62■■□□□ 1.05
PDLIM3-202ENST00000284770 STAT3P40763 770 aa21.62■■□□□ 1.05
PDLIM3-202ENST00000284770 TOB1P50616 345 aaPredicted RBP21.62■■□□□ 1.05
PDLIM3-202ENST00000284770 JAKMIP3Q5VZ66 844 aa21.62■■□□□ 1.05
PDLIM3-202ENST00000284770 SNRNP48Q6IEG0 339 aaKnown RBP21.62■■□□□ 1.05
PDLIM3-202ENST00000284770 FAM43AQ8N2R8 423 aa21.62■■□□□ 1.05
PDLIM3-202ENST00000284770 TMEM260Q9NX78 707 aa21.62■■□□□ 1.05
PDLIM3-202ENST00000284770 MCTP2Q6DN12 878 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 CLEC4DQ8WXI8 215 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 TRERF1Q96PN7 1200 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 USP28Q96RU2 1077 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 BTBD7Q9P203 1132 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 RIPK3Q9Y572 518 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 TRAK2O60296 914 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 APLP1P51693 650 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 INHBEP58166 350 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 PLS1Q14651 629 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 NONOQ15233 471 aaKnown RBP eCLIP21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 TKFCQ3LXA3 575 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 MCF2L2Q86YR7 1114 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 GTF3C2Q8WUA4 911 aaPredicted RBP21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 SCAND2PQ9GZW5 306 aaPredicted RBP21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 CREBZFQ9NS37 354 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 HOMER2Q9NSB8 354 aa21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 NOL7Q9UMY1 257 aaKnown RBP21.61■■□□□ 1.05
PDLIM3-202ENST00000284770 SMCHD1A6NHR9 2005 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 COL11A1P12107 1806 aaPredicted RBP21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 A0A0G2JMZ2 1700 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 GCOM1H8Y6P7 765 aaPredicted RBP21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 FIBPO43427 364 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 CFBP00751 764 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 POLR2MP0CAP2 368 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 CYP2C8P10632 490 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 TRAPPC10P48553 1259 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 FTOQ9C0B1 505 aaKnown RBP eCLIP21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 POLR3EQ9NVU0 708 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 RTEL1Q9NZ71 1219 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 RBPJLQ9UBG7 517 aa21.6■■□□□ 1.05
PDLIM3-202ENST00000284770 RABGAP1Q9Y3P9 1069 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms