RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 IFNKQ9P0W0 207 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 PGAP2Q9UHJ9 254 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 GTPBP6O43824 516 aaPredicted RBP18.82■□□□□ 0.6
CCDC40-201ENST00000269318 TBC1D12O60347 775 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 MRPL12P52815 198 aaKnown RBP18.82■□□□□ 0.6
CCDC40-201ENST00000269318 FANCCQ00597 558 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 CDC37Q16543 378 aaPredicted RBP18.82■□□□□ 0.6
CCDC40-201ENST00000269318 UBE2SQ16763 222 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 CT47A1Q5JQC4 288 aaPredicted RBP18.82■□□□□ 0.6
CCDC40-201ENST00000269318 POTEDQ86YR6 584 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 CDAN1Q8IWY9 1227 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 ENOX1Q8TC92 643 aaKnown RBP18.82■□□□□ 0.6
CCDC40-201ENST00000269318 STAMQ92783 540 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 MTMR9Q96QG7 549 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 NUP88Q99567 741 aaPredicted RBP18.82■□□□□ 0.6
CCDC40-201ENST00000269318 VEZTQ9HBM0 779 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 PYCARDQ9ULZ3 195 aa18.82■□□□□ 0.6
CCDC40-201ENST00000269318 WNT10BO00744 389 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 ERCC5P28715 1186 aaPredicted RBP18.81■□□□□ 0.6
CCDC40-201ENST00000269318 KIAA1524Q8TCG1 905 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 TMEM39BQ9GZU3 492 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 PSTPIP2Q9H939 334 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 FANCLQ9NW38 375 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 OFD1O75665 1012 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 UBA7P41226 1012 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 STAT6P42226 847 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 BTNL9Q6UXG8 535 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 JDP2Q8WYK2 163 aa18.81■□□□□ 0.6
CCDC40-201ENST00000269318 TDP2O95551 362 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 BMP3P12645 472 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 LRMPQ12912 555 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 CUL4BQ13620 913 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 NBPF9Q3BBW0 867 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 IGSF22Q8N9C0 903 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 CACTINQ8WUQ7 758 aaKnown RBP18.8■□□□□ 0.6
CCDC40-201ENST00000269318 GLT8D2Q9H1C3 349 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 BLZF1Q9H2G9 400 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 MYOZ2Q9NPC6 264 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 ZBTB21Q9ULJ3 1066 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 PCDHA1Q9Y5I3 950 aa18.8■□□□□ 0.6
CCDC40-201ENST00000269318 SHTN1A0MZ66 631 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 SLC37A4O43826 429 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 CD44P16070 742 aaKnown RBP18.79■□□□□ 0.6
CCDC40-201ENST00000269318 ZNF18P17022 549 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 TNNI2P48788 182 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 RRAGBQ5VZM2 374 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 PPP4R3AQ6IN85 833 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 LRRC15Q8TF66 581 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 SPTLC3Q9NUV7 552 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 CD2APQ9Y5K6 639 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 ECE1P42892 770 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 ZNF280AP59817 542 aaPredicted RBP18.79■□□□□ 0.6
CCDC40-201ENST00000269318 MAP3K10Q02779 954 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 SYDE2Q5VT97 1194 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 TMX2Q9Y320 296 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 NFE2L3Q9Y4A8 694 aa18.79■□□□□ 0.6
CCDC40-201ENST00000269318 PPP1R3GB7ZBB8 358 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 TMEM232C9JQI7 657 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 TECP42680 631 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 MMP14P50281 582 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 TNIP1Q15025 636 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 R3HDM1Q15032 1099 aaKnown RBP18.78■□□□□ 0.6
CCDC40-201ENST00000269318 CALCRLQ16602 461 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 CABP7Q86V35 215 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 TRMT44Q8IYL2 757 aaKnown RBP18.78■□□□□ 0.6
CCDC40-201ENST00000269318 C17orf53Q8N3J3 647 aaPredicted RBP18.78■□□□□ 0.6
CCDC40-201ENST00000269318 ACER1Q8TDN7 264 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 ARHGEF10LQ9HCE6 1279 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 KBTBD4Q9NVX7 518 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 IMPACTQ9P2X3 320 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 PPP1R1BQ9UD71 204 aaPredicted RBP18.78■□□□□ 0.6
CCDC40-201ENST00000269318 LTBP3Q9NS15 1303 aa18.78■□□□□ 0.6
CCDC40-201ENST00000269318 FXR2P51116 673 aaKnown RBP eCLIP18.77■□□□□ 0.6
CCDC40-201ENST00000269318 NOLC1Q14978 699 aaKnown RBP eCLIP18.77■□□□□ 0.6
CCDC40-201ENST00000269318 KIAA1755Q5JYT7 1200 aa18.77■□□□□ 0.6
CCDC40-201ENST00000269318 LRRC8AQ8IWT6 810 aa18.77■□□□□ 0.6
CCDC40-201ENST00000269318 DPF2Q92785 391 aa18.77■□□□□ 0.6
CCDC40-201ENST00000269318 MMTAG2Q9BU76 263 aaKnown RBP18.77■□□□□ 0.6
CCDC40-201ENST00000269318 AMNQ9BXJ7 453 aa18.77■□□□□ 0.6
CCDC40-201ENST00000269318 ARID5BQ14865 1188 aa18.77■□□□□ 0.59
CCDC40-201ENST00000269318 FILIP1Q7Z7B0 1213 aa18.77■□□□□ 0.59
CCDC40-201ENST00000269318 CUEDC2Q9H467 287 aa18.77■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L15C9J2P7 530 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L13C9JLJ4 530 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L11C9JVI0 530 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L18D6R9N7 530 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L22D6RA61 530 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L17D6RBQ6 530 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L19D6RCP7 530 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L20D6RJB6 530 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 MEIS2O14770 477 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 MYL1P05976 194 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 PLCG1P19174 1290 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 RPS12P25398 132 aaKnown RBP18.76■□□□□ 0.59
CCDC40-201ENST00000269318 CAP2P40123 477 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 TXKP42681 527 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 UBASH3AP57075 661 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 SNAP25P60880 206 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L24Q0WX57 530 aa18.76■□□□□ 0.59
CCDC40-201ENST00000269318 USP17L6PQ6QN14 398 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 192.5 ms