RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 MCM7P33993 719 aa16.08■□□□□ 0.16
SS18-201ENST00000269137 IREB2P48200 963 aaKnown RBP16.08■□□□□ 0.16
SS18-201ENST00000269137 NDUFA8P51970 172 aa16.08■□□□□ 0.16
SS18-201ENST00000269137 RBM43Q6ZSC3 357 aaKnown RBP16.08■□□□□ 0.16
SS18-201ENST00000269137 NEK8Q86SG6 692 aa16.08■□□□□ 0.16
SS18-201ENST00000269137 C4orf32Q8N8J7 132 aa16.08■□□□□ 0.16
SS18-201ENST00000269137 SLF1Q9BQI6 1058 aa16.08■□□□□ 0.16
SS18-201ENST00000269137 TMEM260Q9NX78 707 aa16.08■□□□□ 0.16
SS18-201ENST00000269137 AFG3L2Q9Y4W6 797 aa16.08■□□□□ 0.16
SS18-201ENST00000269137 LAD1O00515 517 aa16.07■□□□□ 0.16
SS18-201ENST00000269137 PFKFB1P16118 471 aa16.07■□□□□ 0.16
SS18-201ENST00000269137 PRKG1Q13976 671 aa16.07■□□□□ 0.16
SS18-201ENST00000269137 VGLL4Q14135 290 aa16.07■□□□□ 0.16
SS18-201ENST00000269137 EAPPQ56P03 285 aaPredicted RBP16.07■□□□□ 0.16
SS18-201ENST00000269137 GAS2L3Q86XJ1 694 aa16.07■□□□□ 0.16
SS18-201ENST00000269137 TBCKQ8TEA7 893 aa16.07■□□□□ 0.16
SS18-201ENST00000269137 SNCAIPQ9Y6H5 919 aa16.07■□□□□ 0.16
SS18-201ENST00000269137 GOLGA6L3A6NEY3 463 aa16.06■□□□□ 0.16
SS18-201ENST00000269137 CTAGE5O15320 804 aa16.06■□□□□ 0.16
SS18-201ENST00000269137 AP3B2Q13367 1082 aa16.06■□□□□ 0.16
SS18-201ENST00000269137 MAP3K11Q16584 847 aa16.06■□□□□ 0.16
SS18-201ENST00000269137 RBM46Q8TBY0 533 aaKnown RBP16.06■□□□□ 0.16
SS18-201ENST00000269137 TNMDQ9H2S6 317 aa16.06■□□□□ 0.16
SS18-201ENST00000269137 CSADQ9Y600 493 aa16.06■□□□□ 0.16
SS18-201ENST00000269137 MRVI1Q9Y6F6 885 aa16.06■□□□□ 0.16
SS18-201ENST00000269137 SMCHD1A6NHR9 2005 aa16.06■□□□□ 0.16
SS18-201ENST00000269137 PIK3CDO00329 1044 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 MEIS2O14770 477 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 FDX1P10109 184 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 GRIN1Q05586 938 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 UBE2SQ16763 222 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 USH1GQ495M9 461 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 SH3D19Q5HYK7 790 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 TIGD1Q96MW7 591 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 RPAP3Q9H6T3 665 aaPredicted RBP16.05■□□□□ 0.16
SS18-201ENST00000269137 PPP1R9AQ9ULJ8 1098 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 OPLAHO14841 1288 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 ZNF202O95125 648 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 FOSP01100 380 aaPredicted RBP16.05■□□□□ 0.16
SS18-201ENST00000269137 SYKP43405 635 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 CAMK4Q16566 473 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 TANGO6Q9C0B7 1094 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 CSRNP2Q9H175 543 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 FAM13BQ9NYF5 915 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 PNMA2Q9UL42 364 aa16.05■□□□□ 0.16
SS18-201ENST00000269137 MRPL11Q9Y3B7 192 aaKnown RBP16.05■□□□□ 0.16
SS18-201ENST00000269137 OTOFQ9HC10 1997 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L15C9J2P7 530 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L13C9JLJ4 530 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L11C9JVI0 530 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L18D6R9N7 530 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L22D6RA61 530 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L17D6RBQ6 530 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L19D6RCP7 530 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L20D6RJB6 530 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 FLOT1O75955 427 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 ICAM1P05362 532 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 PRPHP41219 470 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 HMGCS2P54868 508 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L24Q0WX57 530 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 DGKZQ13574 1117 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 LETM2Q2VYF4 491 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 CCDC174Q6PII3 467 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 USP17L6PQ6QN14 398 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 LDHDQ86WU2 507 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 ANKRD13AQ8IZ07 590 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 SLC38A10Q9HBR0 1119 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 KCNH3Q9ULD8 1083 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 ABCB11O95342 1321 aa16.04■□□□□ 0.16
SS18-201ENST00000269137 EDIL3O43854 480 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 CCNT1O60563 726 aaKnown RBP16.03■□□□□ 0.16
SS18-201ENST00000269137 PPP4R3AQ6IN85 833 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 NAP1L4Q99733 375 aaKnown RBP16.03■□□□□ 0.16
SS18-201ENST00000269137 FUCA2Q9BTY2 467 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 TMEM60Q9H2L4 133 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 TMOD4Q9NZQ9 345 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 PARP14Q460N5 1801 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 ZNF536O15090 1300 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 NEMFO60524 1076 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 USP11P51784 963 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 PPATQ06203 517 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 IL17AQ16552 155 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 TSPY26PQ9H489 355 aa16.03■□□□□ 0.16
SS18-201ENST00000269137 MYH7BA7E2Y1 1941 aa16.02■□□□□ 0.16
SS18-201ENST00000269137 VWA3AA6NCI4 1184 aa16.02■□□□□ 0.16
SS18-201ENST00000269137 GCFC2P16383 781 aaKnown RBP16.02■□□□□ 0.16
SS18-201ENST00000269137 LONP1P36776 959 aaKnown RBP16.02■□□□□ 0.16
SS18-201ENST00000269137 L1TD1Q5T7N2 865 aaKnown RBP16.02■□□□□ 0.16
SS18-201ENST00000269137 ARMC9Q7Z3E5 817 aa16.02■□□□□ 0.16
SS18-201ENST00000269137 ERO1BQ86YB8 467 aa16.02■□□□□ 0.16
SS18-201ENST00000269137 ELOA2Q8IYF1 753 aaPredicted RBP16.02■□□□□ 0.16
SS18-201ENST00000269137 CRYGNQ8WXF5 182 aa16.02■□□□□ 0.16
SS18-201ENST00000269137 SDF4Q9BRK5 362 aa16.02■□□□□ 0.16
SS18-201ENST00000269137 ANO3Q9BYT9 981 aa16.02■□□□□ 0.16
SS18-201ENST00000269137 RLFQ13129 1914 aa16.02■□□□□ 0.15
SS18-201ENST00000269137 UNCXA6NJT0 531 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 ZBED4O75132 1171 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 OR52Z1P0C646 297 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 TAL1P17542 331 aaPredicted RBP16.01■□□□□ 0.15
SS18-201ENST00000269137 MRE11P49959 708 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms