RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TTC26A0AVF1 554 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 PES1O00541 588 aaKnown RBP18.42■□□□□ 0.54
HOXD3-201ENST00000249440 SASH3O75995 380 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 NDUFA10O95299 355 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 OR52Z1P0C646 297 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 ARHGAP25P42331 645 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 DNM2P50570 870 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 NFIXQ14938 502 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 NONOQ15233 471 aaKnown RBP eCLIP18.42■□□□□ 0.54
HOXD3-201ENST00000249440 GRIK5Q16478 980 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 CABP7Q86V35 215 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 ZNF507Q8TCN5 953 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 UBXN6Q9BZV1 441 aa18.42■□□□□ 0.54
HOXD3-201ENST00000249440 SAP30BPQ9UHR5 308 aaKnown RBP18.42■□□□□ 0.54
HOXD3-201ENST00000249440 C15orf52Q6ZUT6 534 aaKnown RBP18.41■□□□□ 0.54
HOXD3-201ENST00000249440 EYA3Q99504 573 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 DNAJC7Q99615 494 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 CHP1Q99653 195 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 RTFDC1Q9BY42 306 aaPredicted RBP18.41■□□□□ 0.54
HOXD3-201ENST00000249440 CAPN11Q9UMQ6 739 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 CDK5RAP2Q96SN8 1893 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 SMCO2A6NFE2 343 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 CCNT1O60563 726 aaKnown RBP18.41■□□□□ 0.54
HOXD3-201ENST00000249440 RFC4P35249 363 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 WHAMMP3Q1A5X7 153 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 LETM2Q2VYF4 491 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 TTI2Q6NXR4 508 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 C16orf86Q6ZW13 317 aa18.41■□□□□ 0.54
HOXD3-201ENST00000249440 HNRNPLLQ8WVV9 542 aaKnown RBP18.41■□□□□ 0.54
HOXD3-201ENST00000249440 BICDL2A1A5D9 508 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 ABL1P00519 1130 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 PLCG1P19174 1290 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 SMARCA1P28370 1054 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 PPP1R2P41236 205 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 BTDP43251 543 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 CDK8P49336 464 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 TXNRD1Q16881 649 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 CSGALNACT2Q8N6G5 542 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 NEDD1Q8NHV4 660 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 RRP36Q96EU6 259 aaKnown RBP18.4■□□□□ 0.54
HOXD3-201ENST00000249440 FUT8Q9BYC5 575 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 SEC63Q9UGP8 760 aaKnown RBP18.4■□□□□ 0.54
HOXD3-201ENST00000249440 FLT1P17948 1338 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 AMPD3Q01432 767 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 SMC1AQ14683 1233 aaKnown RBP18.4■□□□□ 0.54
HOXD3-201ENST00000249440 LONRF2Q1L5Z9 754 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 SOGA3Q5TF21 947 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 NEK8Q86SG6 692 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 ANKZF1Q9H8Y5 726 aa18.4■□□□□ 0.54
HOXD3-201ENST00000249440 CTAGE15A4D2H0 777 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 APBA3O96018 575 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 CTAGE8P0CG41 777 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 PLCG2P16885 1265 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 PDE4DQ08499 809 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 TRAPPC3LQ5T215 181 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 CTAGE6Q86UF2 777 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 FAM114A1Q8IWE2 563 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 CTAGE4Q8IX94 777 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 CNBD1Q8NA66 436 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 MSANTD4Q8NCY6 345 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 NUP58Q9BVL2 599 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 TRIM9Q9C026 710 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 HAUS4Q9H6D7 363 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 TNS1Q9HBL0 1735 aaKnown RBP18.39■□□□□ 0.53
HOXD3-201ENST00000249440 GPR75-ASB3A0A0A6YYF3 556 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 CCNE1P24864 410 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 ORC2Q13416 577 aaPredicted RBP18.39■□□□□ 0.53
HOXD3-201ENST00000249440 TAF3Q5VWG9 929 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 TEX11Q8IYF3 940 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 RETREG2Q8NC44 543 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 P2RX5Q93086 422 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 C7orf25Q9BPX7 421 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 TUBGCP2Q9BSJ2 902 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 EXOC1Q9NV70 894 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 RAB21Q9UL25 225 aa18.39■□□□□ 0.53
HOXD3-201ENST00000249440 CCDC66A2RUB6 948 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 ERLIN1O75477 346 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 SRGNP10124 158 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 LRRC15Q8TF66 581 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 CPVLQ9H3G5 476 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 MYO6Q9UM54 1294 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 USP17L2Q6R6M4 530 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 DUSP9Q99956 384 aaKnown RBP18.38■□□□□ 0.53
HOXD3-201ENST00000249440 CD209Q9NNX6 404 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 GUCA1BQ9UMX6 200 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 REXO2Q9Y3B8 237 aaKnown RBP18.38■□□□□ 0.53
HOXD3-201ENST00000249440 SNED1Q8TER0 1413 aa18.38■□□□□ 0.53
HOXD3-201ENST00000249440 B4DLN1 442 aa18.37■□□□□ 0.53
HOXD3-201ENST00000249440 POLR3GO15318 223 aaPredicted RBP18.37■□□□□ 0.53
HOXD3-201ENST00000249440 TUBBP07437 444 aa18.37■□□□□ 0.53
HOXD3-201ENST00000249440 TRIM21P19474 475 aaKnown RBP18.37■□□□□ 0.53
HOXD3-201ENST00000249440 OAS2P29728 719 aaKnown RBP18.37■□□□□ 0.53
HOXD3-201ENST00000249440 CYP2C19P33261 490 aa18.37■□□□□ 0.53
HOXD3-201ENST00000249440 TECP42680 631 aa18.37■□□□□ 0.53
HOXD3-201ENST00000249440 KRT83P78385 493 aa18.37■□□□□ 0.53
HOXD3-201ENST00000249440 SLC51AQ86UW1 340 aa18.37■□□□□ 0.53
HOXD3-201ENST00000249440 CALML4Q96GE6 196 aa18.37■□□□□ 0.53
HOXD3-201ENST00000249440 GPR101Q96P66 508 aaPredicted RBP18.37■□□□□ 0.53
HOXD3-201ENST00000249440 DDX60LQ5H9U9 1706 aaKnown RBP18.37■□□□□ 0.53
HOXD3-201ENST00000249440 ASIC1P78348 528 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms