RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 VSNL1P62760 191 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 PDE4DQ08499 809 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 LETM2Q2VYF4 491 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 CCDC122Q5T0U0 273 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 FAM114A1Q8IWE2 563 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 NEK11Q8NG66 645 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 NUP58Q9BVL2 599 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 L1RE1Q9UN81 338 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 NUTM2BA6NNL0 878 aaPredicted RBP20.96■□□□□ 0.95
CPSF3-201ENST00000238112 NUTM2EB1AL46 878 aaPredicted RBP20.96■□□□□ 0.95
CPSF3-201ENST00000238112 NONOQ15233 471 aaKnown RBP eCLIP20.96■□□□□ 0.95
CPSF3-201ENST00000238112 TXNRD1Q16881 649 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 WDR59Q6PJI9 974 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 KIAA1328Q86T90 577 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 EHBP1Q8NDI1 1231 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 P2RX5Q93086 422 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 ZMYND12Q9H0C1 365 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 PDE11AQ9HCR9 933 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 ZNF831Q5JPB2 1677 aa20.95■□□□□ 0.95
CPSF3-201ENST00000238112 FLT1P17948 1338 aa20.95■□□□□ 0.95
CPSF3-201ENST00000238112 RPS6KA4O75676 772 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 IPO7O95373 1038 aaKnown RBP20.95■□□□□ 0.94
CPSF3-201ENST00000238112 CCNE1P24864 410 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 TM4SF1P30408 202 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 CYLC1P35663 651 aaPredicted RBP20.95■□□□□ 0.94
CPSF3-201ENST00000238112 HERVK_113P62684 666 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 ASIC1P78348 528 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 TRAPPC11Q7Z392 1133 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 RETREG2Q8NC44 543 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 LRRC15Q8TF66 581 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 DUSP9Q99956 384 aaKnown RBP20.95■□□□□ 0.94
CPSF3-201ENST00000238112 TRIM9Q9C026 710 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 SAP30BPQ9UHR5 308 aaKnown RBP20.95■□□□□ 0.94
CPSF3-201ENST00000238112 RASA1P20936 1047 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 TBC1D8BQ0IIM8 1120 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 MEA1Q16626 185 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 MAPKAPK5Q8IW41 473 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 NOA1Q8NC60 698 aaKnown RBP20.95■□□□□ 0.94
CPSF3-201ENST00000238112 PCMTD1Q96MG8 357 aaPredicted RBP20.95■□□□□ 0.94
CPSF3-201ENST00000238112 SPZ1Q9BXG8 430 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 C6orf50Q9HD87 102 aa20.95■□□□□ 0.94
CPSF3-201ENST00000238112 GNPATO15228 680 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 KRT86O43790 486 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 LDHCP07864 332 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 GNA11P29992 359 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 PPP1R2P41236 205 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 PPP4CP60510 307 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 MSL3Q8N5Y2 521 aaKnown RBP20.94■□□□□ 0.94
CPSF3-201ENST00000238112 CNOT6LQ96LI5 555 aaKnown RBP20.94■□□□□ 0.94
CPSF3-201ENST00000238112 SMCO2A6NFE2 343 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 ENC1O14682 589 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 MTIF2P46199 727 aaKnown RBP20.94■□□□□ 0.94
CPSF3-201ENST00000238112 AMPD3Q01432 767 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 RC3H1Q5TC82 1133 aaKnown RBP20.94■□□□□ 0.94
CPSF3-201ENST00000238112 SOGA3Q5TF21 947 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 EXOC4Q96A65 974 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 JAKMIP2Q96AA8 810 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 AGPAT5Q9NUQ2 364 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 ADAM21Q9UKJ8 722 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 LEMD3Q9Y2U8 911 aa20.94■□□□□ 0.94
CPSF3-201ENST00000238112 GYS2P54840 703 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 HNRNPH2P55795 449 aaKnown RBP20.93■□□□□ 0.94
CPSF3-201ENST00000238112 ZNF804AQ7Z570 1209 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 NEK8Q86SG6 692 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 EEF2KMTQ96G04 330 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 C7orf25Q9BPX7 421 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 SEC63Q9UGP8 760 aaKnown RBP20.93■□□□□ 0.94
CPSF3-201ENST00000238112 SAR1BQ9Y6B6 198 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 KDM4FA0A1W2PPD8 638 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 ANKRD40Q6AI12 368 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 ZNF662Q6ZS27 426 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 RRP36Q96EU6 259 aaKnown RBP20.93■□□□□ 0.94
CPSF3-201ENST00000238112 TTYH3Q9C0H2 523 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 CPVLQ9H3G5 476 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 SUGCTQ9HAC7 445 aa20.93■□□□□ 0.94
CPSF3-201ENST00000238112 TECP42680 631 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 ZBED6P86452 979 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 STK4Q13043 487 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 WDR93Q6P2C0 686 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 CCDC170Q8IYT3 715 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 EYA3Q99504 573 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 NOC4LQ9BVI4 516 aaKnown RBP20.92■□□□□ 0.94
CPSF3-201ENST00000238112 HDAC6Q9UBN7 1215 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 ATP1A1P05023 1023 aaKnown RBP20.92■□□□□ 0.94
CPSF3-201ENST00000238112 CASP8Q14790 479 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 GRIK5Q16478 980 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 FAM98CQ17RN3 349 aaKnown RBP20.92■□□□□ 0.94
CPSF3-201ENST00000238112 CNNM4Q6P4Q7 775 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 CALML4Q96GE6 196 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 NHEJ1Q9H9Q4 299 aaPredicted RBP20.92■□□□□ 0.94
CPSF3-201ENST00000238112 VPS18Q9P253 973 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 TFR2Q9UP52 801 aa20.92■□□□□ 0.94
CPSF3-201ENST00000238112 COL24A1Q17RW2 1714 aa20.91■□□□□ 0.94
CPSF3-201ENST00000238112 KLK7P49862 253 aa20.91■□□□□ 0.94
CPSF3-201ENST00000238112 FKBP15Q5T1M5 1219 aa20.91■□□□□ 0.94
CPSF3-201ENST00000238112 CERS3Q8IU89 383 aa20.91■□□□□ 0.94
CPSF3-201ENST00000238112 ACBD3Q9H3P7 528 aa20.91■□□□□ 0.94
CPSF3-201ENST00000238112 PSD3Q9NYI0 1048 aa20.91■□□□□ 0.94
CPSF3-201ENST00000238112 RTCBQ9Y3I0 505 aaKnown RBP20.91■□□□□ 0.94
CPSF3-201ENST00000238112 EIF3CLB5ME19 914 aaKnown RBP20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms