RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ZNF444Q8N0Y2 327 aaPredicted RBP17.92■□□□□ 0.46
SYNE2-228ENST00000639659 TMEM199Q8N511 208 aa17.92■□□□□ 0.46
SYNE2-228ENST00000639659 PBX4Q9BYU1 374 aa17.92■□□□□ 0.46
SYNE2-228ENST00000639659 ABHD16BQ9H3Z7 469 aa17.92■□□□□ 0.46
SYNE2-228ENST00000639659 PRDM12Q9H4Q4 367 aa17.92■□□□□ 0.46
SYNE2-228ENST00000639659 ELP1O95163 1332 aa17.92■□□□□ 0.46
SYNE2-228ENST00000639659 GSG1L2A8MUP6 293 aa17.91■□□□□ 0.46
SYNE2-228ENST00000639659 ARVCFO00192 962 aa17.91■□□□□ 0.46
SYNE2-228ENST00000639659 CYP2C18P33260 490 aa17.91■□□□□ 0.46
SYNE2-228ENST00000639659 SBK1Q52WX2 424 aa17.91■□□□□ 0.46
SYNE2-228ENST00000639659 TMEM240Q5SV17 173 aa17.91■□□□□ 0.46
SYNE2-228ENST00000639659 ZNF365Q70YC5 407 aa17.91■□□□□ 0.46
SYNE2-228ENST00000639659 CCDC144CPQ8IYA2 1237 aa17.91■□□□□ 0.46
SYNE2-228ENST00000639659 CEP95Q96GE4 821 aa17.91■□□□□ 0.46
SYNE2-228ENST00000639659 FBXO40Q9UH90 709 aa17.91■□□□□ 0.46
SYNE2-228ENST00000639659 IGFBP4P22692 258 aa17.9■□□□□ 0.46
SYNE2-228ENST00000639659 CST5P28325 142 aaPredicted RBP17.9■□□□□ 0.46
SYNE2-228ENST00000639659 CNTN2Q02246 1040 aa17.9■□□□□ 0.46
SYNE2-228ENST00000639659 CCDC85BQ15834 202 aaPredicted RBP17.9■□□□□ 0.46
SYNE2-228ENST00000639659 PSRC1Q6PGN9 363 aaPredicted RBP17.9■□□□□ 0.46
SYNE2-228ENST00000639659 C16orf59Q7L2K0 433 aa17.9■□□□□ 0.46
SYNE2-228ENST00000639659 ZNF467Q7Z7K2 595 aaPredicted RBP17.9■□□□□ 0.46
SYNE2-228ENST00000639659 MIER1Q8N108 512 aa17.9■□□□□ 0.46
SYNE2-228ENST00000639659 OSBP2Q969R2 916 aa17.9■□□□□ 0.46
SYNE2-228ENST00000639659 FGD4Q96M96 766 aa17.9■□□□□ 0.46
SYNE2-228ENST00000639659 SLC38A10Q9HBR0 1119 aa17.9■□□□□ 0.46
SYNE2-228ENST00000639659 EPB41L4AQ9HCS5 686 aaPredicted RBP17.9■□□□□ 0.46
SYNE2-228ENST00000639659 ECHDC1Q9NTX5 307 aa17.9■□□□□ 0.46
SYNE2-228ENST00000639659 FEM1BQ9UK73 627 aa17.9■□□□□ 0.46
SYNE2-228ENST00000639659 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.89■□□□□ 0.45
SYNE2-228ENST00000639659 ATP2A1O14983 1001 aa17.89■□□□□ 0.45
SYNE2-228ENST00000639659 GPAA1O43292 621 aa17.89■□□□□ 0.45
SYNE2-228ENST00000639659 GJA9P57773 515 aa17.89■□□□□ 0.45
SYNE2-228ENST00000639659 SLFN13Q68D06 897 aa17.89■□□□□ 0.45
SYNE2-228ENST00000639659 FAM126BQ8IXS8 530 aa17.89■□□□□ 0.45
SYNE2-228ENST00000639659 CHST13Q8NET6 341 aa17.89■□□□□ 0.45
SYNE2-228ENST00000639659 APPBP2Q92624 585 aa17.89■□□□□ 0.45
SYNE2-228ENST00000639659 GPATCH3Q96I76 525 aa17.89■□□□□ 0.45
SYNE2-228ENST00000639659 UPF3AQ9H1J1 476 aaKnown RBP17.89■□□□□ 0.45
SYNE2-228ENST00000639659 CHMP4BQ9H444 224 aaKnown RBP17.89■□□□□ 0.45
SYNE2-228ENST00000639659 ZNF287Q9HBT7 754 aa17.89■□□□□ 0.45
SYNE2-228ENST00000639659 SPTBN5Q9NRC6 3674 aaKnown RBP17.88■□□□□ 0.45
SYNE2-228ENST00000639659 TMEM232C9JQI7 657 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 M0R2C6 588 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 TTLL1O95922 423 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 TSPY3P0CV98 308 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 TSPY8P0CW00 308 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 BMP3P12645 472 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 CDK7P50613 346 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 TNFAIP2Q03169 654 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 CXCL17Q6UXB2 119 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 KBTBD3Q8NAB2 608 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 NKX2-4Q9H2Z4 354 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 ACAD9Q9H845 621 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 RNF146Q9NTX7 359 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 MSRAQ9UJ68 235 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 MTMR7Q9Y216 660 aa17.88■□□□□ 0.45
SYNE2-228ENST00000639659 DDX49Q9Y6V7 483 aaKnown RBP17.88■□□□□ 0.45
SYNE2-228ENST00000639659 MYO9BQ13459 2157 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 IGKV6D-41A0A0C4DH26 115 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 TNFRSF10AO00220 468 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 RNF113AO15541 343 aaKnown RBP17.87■□□□□ 0.45
SYNE2-228ENST00000639659 PTGS1P23219 599 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 CCL23P55773 120 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 SNAP25P60880 206 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 GIMAP6Q6P9H5 292 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 EEPD1Q7L9B9 569 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 TLK2Q86UE8 772 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 MICALL1Q8N3F8 863 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 MTIF3Q9H2K0 278 aaKnown RBP17.87■□□□□ 0.45
SYNE2-228ENST00000639659 HIPK3Q9H422 1215 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 MTMR4Q9NYA4 1195 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 THEGQ9P2T0 379 aa17.87■□□□□ 0.45
SYNE2-228ENST00000639659 GBF1Q92538 1859 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 TTC28Q96AY4 2481 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 ALAS1P13196 640 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 OAZ1P54368 228 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 RAB30Q15771 203 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 OTOP2Q7RTS6 562 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 IL27Q8NEV9 243 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 AGBL1Q96MI9 1066 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 AP5M1Q9H0R1 490 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 IL23AQ9NPF7 189 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 A1CFQ9NQ94 594 aaKnown RBP17.86■□□□□ 0.45
SYNE2-228ENST00000639659 CXXC1Q9P0U4 656 aaPredicted RBP17.86■□□□□ 0.45
SYNE2-228ENST00000639659 UMODL1Q5DID0 1318 aa17.86■□□□□ 0.45
SYNE2-228ENST00000639659 ASTN1O14525 1302 aa17.85■□□□□ 0.45
SYNE2-228ENST00000639659 DYNC1LI2O43237 492 aaPredicted RBP17.85■□□□□ 0.45
SYNE2-228ENST00000639659 FGBP02675 491 aa17.85■□□□□ 0.45
SYNE2-228ENST00000639659 GNAT2P19087 354 aa17.85■□□□□ 0.45
SYNE2-228ENST00000639659 STAT2P52630 851 aa17.85■□□□□ 0.45
SYNE2-228ENST00000639659 FBXO16Q8IX29 292 aaPredicted RBP17.85■□□□□ 0.45
SYNE2-228ENST00000639659 GMCL1P1Q8NEA9 526 aa17.85■□□□□ 0.45
SYNE2-228ENST00000639659 LRRC37A2A6NM11 1700 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 SOWAHBA6NEL2 793 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 ZBBXA8MT70 800 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 CTAGE5O15320 804 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 MCCP23508 829 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 SLC1A4P43007 532 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 PSMC6P62333 389 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms