RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SERTAD1Q9UHV2 236 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 LOC102724428A0A0B4J2F2 783 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 ERVV-1B6SEH8 477 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 POLR3GO15318 223 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 CELF2O95319 508 aaKnown RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 ATP1A3P13637 1013 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 TRAPPC10P48553 1259 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 SIK1P57059 783 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 KRT83P78385 493 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 PTPAQ15257 358 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 PARP10Q53GL7 1025 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 KLHL10Q6JEL2 608 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 SRGAP1Q7Z6B7 1085 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 TBC1D10CQ8IV04 446 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 GPATCH11Q8N954 259 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 STAG1Q8WVM7 1258 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 DHX58Q96C10 678 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 STRBPQ96SI9 672 aaKnown RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 NUP88Q99567 741 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 LY9Q9HBG7 655 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 GPHNQ9NQX3 736 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 ZNF446Q9NWS9 450 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 MROH7-TTC4A0A0A0MT08 1334 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 PES1O00541 588 aaKnown RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 SLFN14P0C7P3 912 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 GPTP24298 496 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 MCAMP43121 646 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 ZNF157P51786 506 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 MORC3Q14149 939 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 LONRF3Q496Y0 759 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 IFIT1BQ5T764 474 aaKnown RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 ZNF654Q8IZM8 581 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 CAGE1Q8TC20 777 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 TRIM47Q96LD4 638 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 EFCC1Q9HA90 598 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 CDC23Q9UJX2 597 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 UBN2Q6ZU65 1347 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 NAV1Q8NEY1 1877 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 A0A087WWV3 80 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 DDAH1O94760 285 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 RXRAP19793 462 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 OAS2P29728 719 aaKnown RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 CYLC1P35663 651 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 GNAQP50148 359 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 GRM1Q13255 1194 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 SMC1AQ14683 1233 aaKnown RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 CAVIN4Q5BKX8 364 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 RRAGBQ5VZM2 374 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 METTL16Q86W50 562 aaKnown RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 FANCBQ8NB91 859 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 LRRN4CLQ8ND94 238 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 EXOC4Q96A65 974 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 CLIC6Q96NY7 704 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 LUC7LQ9NQ29 371 aaKnown RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 FAM217BQ9NTX9 383 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 DENND2AQ9ULE3 1009 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 RIPOR2Q9Y4F9 1068 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 MRFAP1Q9Y605 127 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 NRXN2Q9P2S2 1712 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 MAGEB6P1A0A0J9YX57 407 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 BTBD18B2RXH4 712 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 FGFR1OPO95684 399 aaKnown RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 CYP7A1P22680 504 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 NLRP5P59047 1200 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 MAP3K9P80192 1104 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 NAA30Q147X3 362 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 KARSQ15046 597 aaKnown RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 ZNF569Q5MCW4 686 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 CYB5R4Q7L1T6 521 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 APTXQ7Z2E3 356 aaKnown RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 KIAA1328Q86T90 577 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 NLRP10Q86W26 655 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 CRACR2BQ8N4Y2 399 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 ARMC5Q96C12 935 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 PCMTD1Q96MG8 357 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 MAP3K14Q99558 947 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 CABP5Q9NP86 173 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 INTS13Q9NVM9 706 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 ADAMTSL1Q8N6G6 1762 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 ITIH6Q6UXX5 1313 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 A0A1B0GTH6 734 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 TCRBV5S4A2TA0A5A2 114 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 MINDY4BA8MYZ0 360 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 PSMA7O14818 248 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 GTPBP6O43824 516 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 MYL1P05976 194 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 BMP6P22004 513 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 HOXA7P31268 230 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 FXR1P51114 621 aaKnown RBP eCLIP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 MDM2Q00987 491 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 PAK1Q13153 545 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 TTC38Q5R3I4 469 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 NT5DC1Q5TFE4 455 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 CC2D1AQ6P1N0 951 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 ERMP1Q7Z2K6 904 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 REXO1L1PQ8IX06 675 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 TTLL11Q8NHH1 800 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 IGDCC4Q8TDY8 1250 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 NUP58Q9BVL2 599 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms