RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 KCNJ14Q9UNX9 436 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 PASKQ96RG2 1323 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 TRPM7Q96QT4 1865 aa16.25■□□□□ 0.19
CLN3-242ENST00000635958 A0A0G2JLL6 359 aaPredicted RBP16.25■□□□□ 0.19
CLN3-242ENST00000635958 PPP1R11O60927 126 aaPredicted RBP16.25■□□□□ 0.19
CLN3-242ENST00000635958 IKQ13123 557 aaPredicted RBP16.25■□□□□ 0.19
CLN3-242ENST00000635958 SAFBQ15424 915 aaKnown RBP eCLIP16.25■□□□□ 0.19
CLN3-242ENST00000635958 CDC37Q16543 378 aaPredicted RBP16.25■□□□□ 0.19
CLN3-242ENST00000635958 QRICH1Q2TAL8 776 aa16.25■□□□□ 0.19
CLN3-242ENST00000635958 GLIPR1L2Q4G1C9 344 aa16.25■□□□□ 0.19
CLN3-242ENST00000635958 TYW1BQ6NUM6 668 aa16.25■□□□□ 0.19
CLN3-242ENST00000635958 HEATR3Q7Z4Q2 680 aa16.25■□□□□ 0.19
CLN3-242ENST00000635958 PRRT2Q7Z6L0 340 aaPredicted RBP16.25■□□□□ 0.19
CLN3-242ENST00000635958 FERMT3Q86UX7 667 aa16.25■□□□□ 0.19
CLN3-242ENST00000635958 CCDC12Q8WUD4 166 aaPredicted RBP16.25■□□□□ 0.19
CLN3-242ENST00000635958 GPKOWQ92917 476 aaPredicted RBP eCLIP16.25■□□□□ 0.19
CLN3-242ENST00000635958 OPTNQ96CV9 577 aa16.25■□□□□ 0.19
CLN3-242ENST00000635958 RANBP17Q9H2T7 1088 aaKnown RBP16.25■□□□□ 0.19
CLN3-242ENST00000635958 FOXP1Q9H334 677 aaPredicted RBP16.25■□□□□ 0.19
CLN3-242ENST00000635958 RPAP3Q9H6T3 665 aaPredicted RBP16.25■□□□□ 0.19
CLN3-242ENST00000635958 FBXO28Q9NVF7 368 aa16.25■□□□□ 0.19
CLN3-242ENST00000635958 PTPRFP10586 1907 aa16.25■□□□□ 0.19
CLN3-242ENST00000635958 ESYT2A0FGR8 921 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 CALML3P27482 149 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 CATSPERGQ6ZRH7 1159 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 BRAPQ7Z569 592 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 PROCA1Q8NCQ7 364 aaPredicted RBP16.24■□□□□ 0.19
CLN3-242ENST00000635958 CCDC148Q8NFR7 591 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 SLF1Q9BQI6 1058 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 ZMYND12Q9H0C1 365 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 RRP9O43818 475 aaKnown RBP16.24■□□□□ 0.19
CLN3-242ENST00000635958 FDX1P10109 184 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 PPP1R18Q6NYC8 613 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 DIS3L2Q8IYB7 885 aaKnown RBP16.24■□□□□ 0.19
CLN3-242ENST00000635958 DAGLBQ8NCG7 672 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 SMC1BQ8NDV3 1235 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 PPP1R9AQ9ULJ8 1098 aa16.24■□□□□ 0.19
CLN3-242ENST00000635958 BTBD18B2RXH4 712 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 KIF28PB7ZC32 967 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 USP17L15C9J2P7 530 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 USP17L13C9JLJ4 530 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 USP17L11C9JVI0 530 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 USP17L18D6R9N7 530 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 USP17L22D6RA61 530 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 USP17L17D6RBQ6 530 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 USP17L19D6RCP7 530 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 USP17L20D6RJB6 530 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 GJA5P36382 358 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 NLRP5P59047 1200 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 USP17L24Q0WX57 530 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 TRAF1Q13077 416 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 SYAP1Q96A49 352 aaPredicted RBP16.23■□□□□ 0.19
CLN3-242ENST00000635958 KIFC2Q96AC6 838 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 AMNQ9BXJ7 453 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 ADAMTS5Q9UNA0 930 aa16.23■□□□□ 0.19
CLN3-242ENST00000635958 HOXA7P31268 230 aaPredicted RBP16.22■□□□□ 0.19
CLN3-242ENST00000635958 NAPAP54920 295 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 MOGSQ13724 837 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 ZSCAN23Q3MJ62 389 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 FBXO11Q86XK2 927 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 COA7Q96BR5 231 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 TANGO6Q9C0B7 1094 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 PCDHA4Q9UN74 947 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 MYPNQ86TC9 1320 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 M0R2N6 131 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 FLOT1O75955 427 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 MSNP26038 577 aaKnown RBP16.22■□□□□ 0.19
CLN3-242ENST00000635958 GNA11P29992 359 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 KRT2P35908 639 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 COG2Q14746 738 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 ATL3Q6DD88 541 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 FASTKD5Q7L8L6 764 aaKnown RBP16.22■□□□□ 0.19
CLN3-242ENST00000635958 NOSTRINQ8IVI9 506 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 OXER1Q8TDS5 423 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 TNFRSF25Q93038 417 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 WNK4Q96J92 1243 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 SLC38A10Q9HBR0 1119 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 BRMS1Q9HCU9 246 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 HOXC10Q9NYD6 342 aa16.22■□□□□ 0.19
CLN3-242ENST00000635958 RLFQ13129 1914 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 LOC285556D6RIA3 1793 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 SMCO2A6NFE2 343 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 DSG3P32926 999 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 FSTL1Q12841 308 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 SNAPC2Q13487 334 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.21■□□□□ 0.19
CLN3-242ENST00000635958 TEX2Q8IWB9 1127 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 BLIDQ8IZY5 108 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 C6orf50Q9HD87 102 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 PCDHA1Q9Y5I3 950 aa16.21■□□□□ 0.19
CLN3-242ENST00000635958 ZBTB48P10074 688 aaPredicted RBP16.2■□□□□ 0.18
CLN3-242ENST00000635958 PRKCSHP14314 528 aaPredicted RBP16.2■□□□□ 0.18
CLN3-242ENST00000635958 SNAP25P60880 206 aa16.2■□□□□ 0.18
CLN3-242ENST00000635958 NR5A1Q13285 461 aa16.2■□□□□ 0.18
CLN3-242ENST00000635958 FAM173BQ6P4H8 233 aa16.2■□□□□ 0.18
CLN3-242ENST00000635958 MS4A4AQ96JQ5 239 aa16.2■□□□□ 0.18
CLN3-242ENST00000635958 GLT8D2Q9H1C3 349 aa16.2■□□□□ 0.18
CLN3-242ENST00000635958 PNMA2Q9UL42 364 aa16.2■□□□□ 0.18
CLN3-242ENST00000635958 PARP14Q460N5 1801 aa16.2■□□□□ 0.18
CLN3-242ENST00000635958 ZNF536O15090 1300 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms