RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TMEM47Q9BQJ4 181 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 POTEB2H3BUK9 544 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 RASA1P20936 1047 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 UBA7P41226 1012 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 INF2Q27J81 1249 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 CERS3Q8IU89 383 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 ZNF444Q8N0Y2 327 aaPredicted RBP14.36□□□□□ -0.11
LINC00540-203ENST00000631321 SLC35F6Q8N357 371 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 MSANTD4Q8NCY6 345 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 HNRNPLLQ8WVV9 542 aaKnown RBP14.36□□□□□ -0.11
LINC00540-203ENST00000631321 DNAJC7Q99615 494 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 ZMYND12Q9H0C1 365 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 RAB21Q9UL25 225 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 NUTM2BA6NNL0 878 aaPredicted RBP14.35□□□□□ -0.11
LINC00540-203ENST00000631321 PP2D1A8MPX8 630 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 NUTM2EB1AL46 878 aaPredicted RBP14.35□□□□□ -0.11
LINC00540-203ENST00000631321 GNPATO15228 680 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 LDHCP07864 332 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 PMS1P54277 932 aaKnown RBP14.35□□□□□ -0.11
LINC00540-203ENST00000631321 STIM1Q13586 685 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 GRAPQ13588 217 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 FAM98CQ17RN3 349 aaKnown RBP14.35□□□□□ -0.11
LINC00540-203ENST00000631321 SLC4A8Q2Y0W8 1093 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 TTI2Q6NXR4 508 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 HEATR3Q7Z4Q2 680 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 CCDC24Q8N4L8 307 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 GRAPLQ8TC17 118 aaPredicted RBP14.35□□□□□ -0.11
LINC00540-203ENST00000631321 NAPGQ99747 312 aaPredicted RBP14.35□□□□□ -0.11
LINC00540-203ENST00000631321 FUT8Q9BYC5 575 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 FLT1P17948 1338 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 TRIM49BA6NDI0 452 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 PSMA7O14818 248 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 WHAMMP3Q1A5X7 153 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 KIF4BQ2VIQ3 1234 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 OR8K1Q8NGG5 319 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 LRRC15Q8TF66 581 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 DHTKD1Q96HY7 919 aaPredicted RBP14.35□□□□□ -0.11
LINC00540-203ENST00000631321 ANKZF1Q9H8Y5 726 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 MAPK8IP1Q9UQF2 711 aa14.35□□□□□ -0.11
LINC00540-203ENST00000631321 TTC26A0AVF1 554 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 SMARCA1P28370 1054 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 DIXDC1Q155Q3 683 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 GRIK5Q16478 980 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 PTF1AQ7RTS3 328 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 KRT25Q7Z3Z0 450 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 SLC44A5Q8NCS7 719 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 TGFBRAP1Q8WUH2 860 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 RTFDC1Q9BY42 306 aaPredicted RBP14.34□□□□□ -0.11
LINC00540-203ENST00000631321 ZNF287Q9HBT7 754 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 CAPN11Q9UMQ6 739 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 REXO2Q9Y3B8 237 aaKnown RBP14.34□□□□□ -0.11
LINC00540-203ENST00000631321 RTCBQ9Y3I0 505 aaKnown RBP14.34□□□□□ -0.11
LINC00540-203ENST00000631321 EPN1Q9Y6I3 576 aaPredicted RBP14.34□□□□□ -0.11
LINC00540-203ENST00000631321 NDUFA10O95299 355 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 AMPD2Q01433 879 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 ZNF662Q6ZS27 426 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 ZNF804AQ7Z570 1209 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 ARHGEF1Q92888 912 aaKnown RBP14.34□□□□□ -0.11
LINC00540-203ENST00000631321 ANKIB1Q9P2G1 1089 aa14.34□□□□□ -0.11
LINC00540-203ENST00000631321 TNRC6CQ9HCJ0 1690 aaKnown RBP14.34□□□□□ -0.11
LINC00540-203ENST00000631321 SNED1Q8TER0 1413 aa14.33□□□□□ -0.11
LINC00540-203ENST00000631321 KLRF2D3W0D1 207 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 MAP2K7O14733 419 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 ABL1P00519 1130 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 SRGNP10124 158 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 CYP2C19P33261 490 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 ORC2Q13416 577 aaPredicted RBP14.33□□□□□ -0.12
LINC00540-203ENST00000631321 VPS72Q15906 364 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 MEA1Q16626 185 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 LONRF2Q1L5Z9 754 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 COBLL1Q53SF7 1204 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 C16orf86Q6ZW13 317 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 DUSP9Q99956 384 aaKnown RBP14.33□□□□□ -0.12
LINC00540-203ENST00000631321 C7orf25Q9BPX7 421 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 SLF1Q9BQI6 1058 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 OR52Z1P0C646 297 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 PPP1R2P41236 205 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 NOVP48745 357 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 DNM2P50570 870 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 TAF3Q5VWG9 929 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 CABP7Q86V35 215 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 AMIGO3Q86WK7 504 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 MSL3Q8N5Y2 521 aaKnown RBP14.33□□□□□ -0.12
LINC00540-203ENST00000631321 RASSF8Q8NHQ8 419 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 NEDD1Q8NHV4 660 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 TRIM47Q96LD4 638 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 CHP1Q99653 195 aa14.33□□□□□ -0.12
LINC00540-203ENST00000631321 LUC7L2Q9Y383 392 aaKnown RBP14.33□□□□□ -0.12
LINC00540-203ENST00000631321 PLCG1P19174 1290 aa14.32□□□□□ -0.12
LINC00540-203ENST00000631321 PIP4K2BP78356 416 aa14.32□□□□□ -0.12
LINC00540-203ENST00000631321 SMC1AQ14683 1233 aaKnown RBP14.32□□□□□ -0.12
LINC00540-203ENST00000631321 NONOQ15233 471 aaKnown RBP eCLIP14.32□□□□□ -0.12
LINC00540-203ENST00000631321 TRIM9Q9C026 710 aa14.32□□□□□ -0.12
LINC00540-203ENST00000631321 TTYH3Q9C0H2 523 aa14.32□□□□□ -0.12
LINC00540-203ENST00000631321 MAGEC2Q9UBF1 373 aaPredicted RBP14.32□□□□□ -0.12
LINC00540-203ENST00000631321 PUF60Q9UHX1 559 aaKnown RBP14.32□□□□□ -0.12
LINC00540-203ENST00000631321 STX8Q9UNK0 236 aa14.32□□□□□ -0.12
LINC00540-203ENST00000631321 SBF2Q86WG5 1849 aa14.32□□□□□ -0.12
LINC00540-203ENST00000631321 NAV1Q8NEY1 1877 aa14.32□□□□□ -0.12
LINC00540-203ENST00000631321 GPR75-ASB3A0A0A6YYF3 556 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms