RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SYDE2Q5VT97 1194 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 TTBK2Q6IQ55 1244 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 CHRDL2Q6WN34 429 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 CRISPLD2Q9H0B8 497 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 PRR12Q9ULL5 1215 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 ADAMTS5Q9UNA0 930 aa21.1■□□□□ 0.97
CLN3-239ENST00000628023 DHX16O60231 1041 aaKnown RBP21.09■□□□□ 0.97
CLN3-239ENST00000628023 DDAH1O94760 285 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 FDX1P10109 184 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 XRCC5P13010 732 aaKnown RBP21.09■□□□□ 0.97
CLN3-239ENST00000628023 LIFRP42702 1097 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 SLC4A3P48751 1232 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 FXR1P51114 621 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLN3-239ENST00000628023 EXOSC10Q01780 885 aaKnown RBP21.09■□□□□ 0.97
CLN3-239ENST00000628023 TMEM132BQ14DG7 1078 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 NECAB2Q7Z6G3 386 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 ZNF654Q8IZM8 581 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 CPXCR1Q8N123 301 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 MOV10L1Q9BXT6 1211 aaKnown RBP21.09■□□□□ 0.97
CLN3-239ENST00000628023 PORCNQ9H237 461 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 SLC12A7Q9Y666 1083 aa21.09■□□□□ 0.97
CLN3-239ENST00000628023 CYP2B6P20813 491 aa21.08■□□□□ 0.97
CLN3-239ENST00000628023 RPS6KB1P23443 525 aa21.08■□□□□ 0.97
CLN3-239ENST00000628023 SYNE3Q6ZMZ3 975 aa21.08■□□□□ 0.97
CLN3-239ENST00000628023 NCAPG2Q86XI2 1143 aa21.08■□□□□ 0.97
CLN3-239ENST00000628023 ANKLE1Q8NAG6 615 aa21.08■□□□□ 0.97
CLN3-239ENST00000628023 TEX13BQ9BXU2 312 aa21.08■□□□□ 0.97
CLN3-239ENST00000628023 SLC38A10Q9HBR0 1119 aa21.08■□□□□ 0.97
CLN3-239ENST00000628023 RAVER2Q9HCJ3 691 aaKnown RBP21.08■□□□□ 0.97
CLN3-239ENST00000628023 CYP46A1Q9Y6A2 500 aa21.08■□□□□ 0.97
CLN3-239ENST00000628023 IVNS1ABPQ9Y6Y0 642 aa21.08■□□□□ 0.97
CLN3-239ENST00000628023 COL11A1P12107 1806 aaPredicted RBP21.08■□□□□ 0.96
CLN3-239ENST00000628023 STAT3P40763 770 aa21.07■□□□□ 0.96
CLN3-239ENST00000628023 ANAPC15P60006 121 aa21.07■□□□□ 0.96
CLN3-239ENST00000628023 SNAP25P60880 206 aa21.07■□□□□ 0.96
CLN3-239ENST00000628023 GRM4Q14833 912 aa21.07■□□□□ 0.96
CLN3-239ENST00000628023 SNRNP48Q6IEG0 339 aaKnown RBP21.07■□□□□ 0.96
CLN3-239ENST00000628023 CCDC174Q6PII3 467 aa21.07■□□□□ 0.96
CLN3-239ENST00000628023 BTNL9Q6UXG8 535 aa21.07■□□□□ 0.96
CLN3-239ENST00000628023 REPS2Q8NFH8 660 aa21.07■□□□□ 0.96
CLN3-239ENST00000628023 CTCFLQ8NI51 663 aaPredicted RBP21.07■□□□□ 0.96
CLN3-239ENST00000628023 PAWRQ96IZ0 340 aaKnown RBP21.07■□□□□ 0.96
CLN3-239ENST00000628023 MYL10Q9BUA6 226 aa21.07■□□□□ 0.96
CLN3-239ENST00000628023 UPF2Q9HAU5 1272 aaKnown RBP21.07■□□□□ 0.96
CLN3-239ENST00000628023 NAP1L2Q9ULW6 460 aaPredicted RBP21.07■□□□□ 0.96
CLN3-239ENST00000628023 TRIOBPQ9H2D6 2365 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 SLC25A27O95847 323 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 ERCC3P19447 782 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 KIF5BP33176 963 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 COPB2P35606 906 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 RGS2P41220 211 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 OAZ1P54368 228 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 Q6ZUG5 572 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 RUFY3Q7L099 469 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 GPR142Q7Z601 462 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 PLEKHH3Q7Z736 793 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 RIOX2Q8IUF8 465 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 TRIB2Q92519 343 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 UPF3BQ9BZI7 483 aaKnown RBP21.06■□□□□ 0.96
CLN3-239ENST00000628023 UBA5Q9GZZ9 404 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 CPVLQ9H3G5 476 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 ZSWIM6Q9HCJ5 1215 aa21.06■□□□□ 0.96
CLN3-239ENST00000628023 ZNF214Q9UL59 606 aaPredicted RBP21.06■□□□□ 0.96
CLN3-239ENST00000628023 CALM1P0DP23 149 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 CALM2P0DP24 149 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 CALM3P0DP25 149 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 TROAPQ12815 778 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 SGMS1Q86VZ5 419 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 MICU3Q86XE3 530 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 RAB11FIP4Q86YS3 637 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 STAG2Q8N3U4 1231 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 SHCBP1Q8NEM2 672 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 TM6SF1Q9BZW5 370 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 MROH8Q9H579 483 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 MAD2L2Q9UI95 211 aa21.05■□□□□ 0.96
CLN3-239ENST00000628023 KLRF2D3W0D1 207 aa21.04■□□□□ 0.96
CLN3-239ENST00000628023 RXRAP19793 462 aa21.04■□□□□ 0.96
CLN3-239ENST00000628023 TRIM32Q13049 653 aa21.04■□□□□ 0.96
CLN3-239ENST00000628023 CCDC144CPQ8IYA2 1237 aa21.04■□□□□ 0.96
CLN3-239ENST00000628023 BRF1Q92994 677 aa21.04■□□□□ 0.96
CLN3-239ENST00000628023 RANBP17Q9H2T7 1088 aaKnown RBP21.04■□□□□ 0.96
CLN3-239ENST00000628023 KLF18A0A0U1RQI7 1052 aa21.03■□□□□ 0.96
CLN3-239ENST00000628023 ATP2A1O14983 1001 aa21.03■□□□□ 0.96
CLN3-239ENST00000628023 PRKAR2AP13861 404 aaKnown RBP21.03■□□□□ 0.96
CLN3-239ENST00000628023 APBA2Q99767 749 aa21.03■□□□□ 0.96
CLN3-239ENST00000628023 VAT1LQ9HCJ6 419 aa21.03■□□□□ 0.96
CLN3-239ENST00000628023 HOMER2Q9NSB8 354 aa21.03■□□□□ 0.96
CLN3-239ENST00000628023 RBM27Q9P2N5 1060 aaKnown RBP21.03■□□□□ 0.96
CLN3-239ENST00000628023 CCPG1Q9ULG6 757 aa21.03■□□□□ 0.96
CLN3-239ENST00000628023 PALM3A6NDB9 673 aaPredicted RBP21.02■□□□□ 0.96
CLN3-239ENST00000628023 ZBTB43O43298 467 aa21.02■□□□□ 0.96
CLN3-239ENST00000628023 CDC37Q16543 378 aaPredicted RBP21.02■□□□□ 0.96
CLN3-239ENST00000628023 MORN1Q5T089 497 aa21.02■□□□□ 0.96
CLN3-239ENST00000628023 MAP3K21Q5TCX8 1036 aa21.02■□□□□ 0.96
CLN3-239ENST00000628023 APOA5Q6Q788 366 aa21.02■□□□□ 0.96
CLN3-239ENST00000628023 ADGRF4Q8IZF3 695 aa21.02■□□□□ 0.96
CLN3-239ENST00000628023 AGBL1Q96MI9 1066 aa21.02■□□□□ 0.96
CLN3-239ENST00000628023 MAP3K14Q99558 947 aa21.02■□□□□ 0.96
CLN3-239ENST00000628023 PLXNB2O15031 1838 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 GOLGA8AA7E2F4 631 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms