RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FAM177A1Q8N128 213 aaPredicted RBP12.02□□□□□ -0.49
CUX1-221ENST00000622516 GSDMAQ96QA5 445 aa12.02□□□□□ -0.49
CUX1-221ENST00000622516 SPZ1Q9BXG8 430 aa12.02□□□□□ -0.49
CUX1-221ENST00000622516 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.02□□□□□ -0.497e-6■□□□□ 9.2
CUX1-221ENST00000622516 PRDM4Q9UKN5 801 aa12.02□□□□□ -0.49
CUX1-221ENST00000622516 SYNRGQ9UMZ2 1314 aa12.02□□□□□ -0.49
CUX1-221ENST00000622516 V9GYY5 206 aaPredicted RBP12.02□□□□□ -0.49
CUX1-221ENST00000622516 PLSCR1O15162 318 aa12.02□□□□□ -0.49
CUX1-221ENST00000622516 PPP1R13BQ96KQ4 1090 aa12.02□□□□□ -0.49
CUX1-221ENST00000622516 DDTLA6NHG4 134 aaPredicted RBP12.01□□□□□ -0.49
CUX1-221ENST00000622516 LONP1P36776 959 aaKnown RBP12.01□□□□□ -0.49
CUX1-221ENST00000622516 AOC3Q16853 763 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 ARL6IP4Q66PJ3 421 aaKnown RBP12.01□□□□□ -0.49
CUX1-221ENST00000622516 NYAP1Q6ZVC0 841 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 TMC4Q7Z404 712 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 TMX1Q9H3N1 280 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 C6orf50Q9HD87 102 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 DISC1Q9NRI5 854 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 TRIM49BA6NDI0 452 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 TXLNAP40222 546 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 TXKP42681 527 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 UBE2SQ16763 222 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 CCDC96Q2M329 555 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 POTEDQ86YR6 584 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 LZTS2Q9BRK4 669 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 DNAJC18Q9H819 358 aa12.01□□□□□ -0.49
CUX1-221ENST00000622516 RPN1P04843 607 aaKnown RBP12□□□□□ -0.49
CUX1-221ENST00000622516 ERCC5P28715 1186 aaPredicted RBP12□□□□□ -0.49
CUX1-221ENST00000622516 SNAP25P60880 206 aa12□□□□□ -0.49
CUX1-221ENST00000622516 NONOQ15233 471 aaKnown RBP eCLIP12□□□□□ -0.491e-6■■■□□ 18.5
CUX1-221ENST00000622516 SPATA1Q5VX52 437 aa12□□□□□ -0.49
CUX1-221ENST00000622516 REXO1Q8N1G1 1221 aaKnown RBP12□□□□□ -0.49
CUX1-221ENST00000622516 CCDC112Q8NEF3 446 aa12□□□□□ -0.49
CUX1-221ENST00000622516 USP17L10C9JJH3 530 aa12□□□□□ -0.49
CUX1-221ENST00000622516 H0YIN7 160 aa12□□□□□ -0.49
CUX1-221ENST00000622516 ECE2O60344 883 aa12□□□□□ -0.49
CUX1-221ENST00000622516 TTLL1O95922 423 aa12□□□□□ -0.49
CUX1-221ENST00000622516 GNA11P29992 359 aa12□□□□□ -0.49
CUX1-221ENST00000622516 SPECC1LQ69YQ0 1117 aa12□□□□□ -0.49
CUX1-221ENST00000622516 SYT10Q6XYQ8 523 aa12□□□□□ -0.49
CUX1-221ENST00000622516 ADGRF4Q8IZF3 695 aa12□□□□□ -0.49
CUX1-221ENST00000622516 LTBP1Q14766 1721 aa12□□□□□ -0.49
CUX1-221ENST00000622516 GTPBP6O43824 516 aaPredicted RBP12□□□□□ -0.49
CUX1-221ENST00000622516 PPP1R11O60927 126 aaPredicted RBP12□□□□□ -0.49
CUX1-221ENST00000622516 TDP2O95551 362 aa12□□□□□ -0.49
CUX1-221ENST00000622516 PRCPP42785 496 aa12□□□□□ -0.49
CUX1-221ENST00000622516 NR1I3Q14994 352 aa12□□□□□ -0.49
CUX1-221ENST00000622516 APTXQ7Z2E3 356 aaKnown RBP12□□□□□ -0.49
CUX1-221ENST00000622516 NEK8Q86SG6 692 aa12□□□□□ -0.49
CUX1-221ENST00000622516 DAGLBQ8NCG7 672 aa12□□□□□ -0.49
CUX1-221ENST00000622516 HPS3Q969F9 1004 aa12□□□□□ -0.49
CUX1-221ENST00000622516 VPS16Q9H269 839 aa12□□□□□ -0.49
CUX1-221ENST00000622516 RIOX1Q9H6W3 641 aa12□□□□□ -0.49
CUX1-221ENST00000622516 JMJD4Q9H9V9 463 aa12□□□□□ -0.49
CUX1-221ENST00000622516 IGSF3O75054 1194 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 GDF11O95390 407 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 PLCG1P19174 1290 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 GTF2F1P35269 517 aaKnown RBP eCLIP11.99□□□□□ -0.492e-8■■■□□ 18.7
CUX1-221ENST00000622516 TNNI2P48788 182 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 EN1Q05925 392 aaPredicted RBP11.99□□□□□ -0.49
CUX1-221ENST00000622516 DESI2Q9BSY9 194 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 PDCL3Q9H2J4 239 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 MORC2Q9Y6X9 1032 aaPredicted RBP11.99□□□□□ -0.49
CUX1-221ENST00000622516 SLC37A4O43826 429 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 OR52Z1P0C646 297 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 TAL1P17542 331 aaPredicted RBP11.99□□□□□ -0.49
CUX1-221ENST00000622516 PMS1P54277 932 aaKnown RBP11.99□□□□□ -0.49
CUX1-221ENST00000622516 MTF1Q14872 753 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 TC2NQ8N9U0 490 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 NELFBQ8WX92 580 aa11.99□□□□□ -0.49
CUX1-221ENST00000622516 TDRD3Q9H7E2 651 aaKnown RBP11.99□□□□□ -0.49
CUX1-221ENST00000622516 HLA-DOAP06340 250 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 EZH2Q15910 746 aaKnown RBP11.98□□□□□ -0.49
CUX1-221ENST00000622516 KMT5BQ4FZB7 885 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 GALNT17Q6IS24 598 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 HHIPL2Q6UWX4 724 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 SH3BP5LQ7L8J4 393 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 KRT25Q7Z3Z0 450 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 PODNQ7Z5L7 613 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 CABP7Q86V35 215 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 CCDC12Q8WUD4 166 aaPredicted RBP11.98□□□□□ -0.49
CUX1-221ENST00000622516 PCNTO95613 3336 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 SCN9AQ15858 1988 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 IGKV6D-41A0A0C4DH26 115 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 A0A1B0GTH6 734 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 NRDCO43847 1150 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 NOVP48745 357 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 TOGARAM2Q6ZUX3 1019 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 TMEM139Q8IV31 216 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 NUP88Q99567 741 aaPredicted RBP11.98□□□□□ -0.49
CUX1-221ENST00000622516 BAG1Q99933 345 aaPredicted RBP11.98□□□□□ -0.49
CUX1-221ENST00000622516 TAB2Q9NYJ8 693 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 FAM198AQ9UFP1 575 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 SUGT1Q9Y2Z0 365 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 LRRC37AA6NMS7 1700 aa11.98□□□□□ -0.49
CUX1-221ENST00000622516 COL11A2P13942 1736 aaPredicted RBP11.98□□□□□ -0.49
CUX1-221ENST00000622516 POTEMA6NI47 508 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 C21orf2O43822 256 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 EDIL3O43854 480 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 RBL2Q08999 1139 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms