RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 KIF3AQ9Y496 699 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 STK36Q9NRP7 1315 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 DEXIO95424 95 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 CYP2C8P10632 490 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 CDC37Q16543 378 aaPredicted RBP17.01■□□□□ 0.31
CD48-203ENST00000613788 PIBF1Q8WXW3 757 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 JAK2O60674 1132 aa17■□□□□ 0.31
CD48-203ENST00000613788 PPFIA3O75145 1194 aa17■□□□□ 0.31
CD48-203ENST00000613788 GCLCP48506 637 aaPredicted RBP17■□□□□ 0.31
CD48-203ENST00000613788 OAZ1P54368 228 aa17■□□□□ 0.31
CD48-203ENST00000613788 TAF1CQ15572 869 aaPredicted RBP17■□□□□ 0.31
CD48-203ENST00000613788 QRICH1Q2TAL8 776 aa17■□□□□ 0.31
CD48-203ENST00000613788 FAM184AQ8NB25 1140 aa17■□□□□ 0.31
CD48-203ENST00000613788 DDX11Q96FC9 970 aa17■□□□□ 0.31
CD48-203ENST00000613788 RABGAP1Q9Y3P9 1069 aa17■□□□□ 0.31
CD48-203ENST00000613788 hCG_1642624A0A1W2PR95 340 aa16.99■□□□□ 0.31
CD48-203ENST00000613788 SNAP25P60880 206 aa16.99■□□□□ 0.31
CD48-203ENST00000613788 PFKFB3Q16875 520 aaPredicted RBP16.99■□□□□ 0.31
CD48-203ENST00000613788 CCDC174Q6PII3 467 aa16.99■□□□□ 0.31
CD48-203ENST00000613788 FBXO11Q86XK2 927 aa16.99■□□□□ 0.31
CD48-203ENST00000613788 AMNQ9BXJ7 453 aa16.99■□□□□ 0.31
CD48-203ENST00000613788 ZFYVE28Q9HCC9 887 aa16.99■□□□□ 0.31
CD48-203ENST00000613788 hCG_1984214I3L0E3 225 aa16.98■□□□□ 0.31
CD48-203ENST00000613788 ATP2A1O14983 1001 aa16.98■□□□□ 0.31
CD48-203ENST00000613788 ICAM1P05362 532 aa16.98■□□□□ 0.31
CD48-203ENST00000613788 SCG2P13521 617 aa16.98■□□□□ 0.31
CD48-203ENST00000613788 FDPSP14324 419 aaKnown RBP16.98■□□□□ 0.31
CD48-203ENST00000613788 CPXCR1Q8N123 301 aa16.98■□□□□ 0.31
CD48-203ENST00000613788 ZNF713Q8N859 430 aaPredicted RBP16.98■□□□□ 0.31
CD48-203ENST00000613788 CA12O43570 354 aa16.97■□□□□ 0.31
CD48-203ENST00000613788 XBP1P17861 261 aa16.97■□□□□ 0.31
CD48-203ENST00000613788 GJB2P29033 226 aa16.97■□□□□ 0.31
CD48-203ENST00000613788 TMEM132BQ14DG7 1078 aa16.97■□□□□ 0.31
CD48-203ENST00000613788 PKN1Q16512 942 aa16.97■□□□□ 0.31
CD48-203ENST00000613788 REPS2Q8NFH8 660 aa16.97■□□□□ 0.31
CD48-203ENST00000613788 PAGR1Q9BTK6 254 aa16.97■□□□□ 0.31
CD48-203ENST00000613788 RAVER2Q9HCJ3 691 aaKnown RBP16.97■□□□□ 0.31
CD48-203ENST00000613788 FOXD4L1Q9NU39 408 aa16.97■□□□□ 0.31
CD48-203ENST00000613788 RBPJLQ9UBG7 517 aa16.97■□□□□ 0.31
CD48-203ENST00000613788 DTNBO60941 627 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 STAT3P40763 770 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 PLS1Q14651 629 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 HEATR3Q7Z4Q2 680 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 SPRYD3Q8NCJ5 442 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 CCDC12Q8WUD4 166 aaPredicted RBP16.96■□□□□ 0.31
CD48-203ENST00000613788 ALG1Q9BT22 464 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 TEX13BQ9BXU2 312 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 CWC22Q9HCG8 908 aaKnown RBP16.96■□□□□ 0.31
CD48-203ENST00000613788 BTBD7Q9P203 1132 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 ZNF214Q9UL59 606 aaPredicted RBP16.96■□□□□ 0.31
CD48-203ENST00000613788 CCPG1Q9ULG6 757 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 PCDHA1Q9Y5I3 950 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 ZNF536O15090 1300 aa16.96■□□□□ 0.31
CD48-203ENST00000613788 TLR2O60603 784 aa16.96■□□□□ 0.3
CD48-203ENST00000613788 SLC4A3P48751 1232 aa16.96■□□□□ 0.3
CD48-203ENST00000613788 POTEEQ6S8J3 1075 aa16.96■□□□□ 0.3
CD48-203ENST00000613788 FAM177A1Q8N128 213 aaPredicted RBP16.96■□□□□ 0.3
CD48-203ENST00000613788 GPRC5AQ8NFJ5 357 aa16.96■□□□□ 0.3
CD48-203ENST00000613788 AGBL1Q96MI9 1066 aa16.96■□□□□ 0.3
CD48-203ENST00000613788 SH3GLB2Q9NR46 395 aa16.96■□□□□ 0.3
CD48-203ENST00000613788 BARHL2Q9NY43 387 aa16.96■□□□□ 0.3
CD48-203ENST00000613788 MORF4L1Q9UBU8 362 aa16.96■□□□□ 0.3
CD48-203ENST00000613788 PPP1R11O60927 126 aaPredicted RBP16.95■□□□□ 0.3
CD48-203ENST00000613788 CNMDO75829 334 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 PDCP20941 246 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 COPB2P35606 906 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 ERVK-9P63128 1117 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 ERVK-24P63145 666 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 CCNA1P78396 465 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 MAP2K1Q02750 393 aaPredicted RBP16.95■□□□□ 0.3
CD48-203ENST00000613788 TRIM29Q14134 588 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 TKFCQ3LXA3 575 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 USH1GQ495M9 461 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 WWC2Q6AWC2 1192 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 SNRNP48Q6IEG0 339 aaKnown RBP16.95■□□□□ 0.3
CD48-203ENST00000613788 ANKRD13CQ8N6S4 541 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 COA7Q96BR5 231 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 IPO9Q96P70 1041 aaKnown RBP16.95■□□□□ 0.3
CD48-203ENST00000613788 SPATC1LQ9H0A9 340 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 TXNRD2Q9NNW7 524 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 MRPL11Q9Y3B7 192 aaKnown RBP16.95■□□□□ 0.3
CD48-203ENST00000613788 RLFQ13129 1914 aa16.95■□□□□ 0.3
CD48-203ENST00000613788 ABCB11O95342 1321 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 SLC25A27O95847 323 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 ALAS1P13196 640 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 NAPAP54920 295 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 CRHR2Q13324 411 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 FAM110CQ1W6H9 321 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 PPP1R18Q6NYC8 613 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 RIOX2Q8IUF8 465 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 CCDC148Q8NFR7 591 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 GPKOWQ92917 476 aaPredicted RBP eCLIP16.94■□□□□ 0.3
CD48-203ENST00000613788 AIFM3Q96NN9 605 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 RNF186Q9NXI6 227 aa16.94■□□□□ 0.3
CD48-203ENST00000613788 BAZ2BQ9UIF8 2168 aaKnown RBP16.93■□□□□ 0.3
CD48-203ENST00000613788 STXBP3O00186 592 aa16.93■□□□□ 0.3
CD48-203ENST00000613788 PDIA4P13667 645 aaKnown RBP16.93■□□□□ 0.3
CD48-203ENST00000613788 Q3C1V9 767 aa16.93■□□□□ 0.3
CD48-203ENST00000613788 LARP1BQ659C4 914 aaKnown RBP16.93■□□□□ 0.3
CD48-203ENST00000613788 C17orf99Q6UX52 265 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms