RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	SLC16A2	P36021	539 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	ZNF165	P49910	485 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	IK	Q13123	557 aa	Predicted RBP	13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	ZYX	Q15942	572 aa	Known RBP	13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	ANO6	Q4KMQ2	910 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	BTNL9	Q6UXG8	535 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	HEATR3	Q7Z4Q2	680 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	MTERF4	Q7Z6M4	381 aa	Known RBP	13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	ZNF713	Q8N859	430 aa	Predicted RBP	13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	ZNF280C	Q8ND82	737 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	ENGASE	Q8NFI3	743 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	CCDC148	Q8NFR7	591 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	NUP88	Q99567	741 aa	Predicted RBP	13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	PHF20	Q9BVI0	1012 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	CBX8	Q9HC52	389 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	BRMS1	Q9HCU9	246 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	BARHL2	Q9NY43	387 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	ZHX2	Q9Y6X8	837 aa		13.37	□□□□□ -0.27
VRK3-223	ENST00000601341	POLR2A	P24928	1970 aa	Known RBP	13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	PNMA6F	A0A0J9YX94	578 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	KIN	O60870	393 aa	Known RBP	13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	POTEI	P0CG38	1075 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	POTEJ	P0CG39	1038 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	U2AF2	P26368	475 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	CALML3	P27482	149 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	STAT2	P52630	851 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	SPP2	Q13103	211 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	CAMK4	Q16566	473 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	STX1A	Q16623	288 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	KIAA1755	Q5JYT7	1200 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	FAM83B	Q5T0W9	1011 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	LDHD	Q86WU2	507 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	PLA2G4D	Q86XP0	818 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	DIS3L2	Q8IYB7	885 aa	Known RBP	13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	USP28	Q96RU2	1077 aa		13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	FOXP1	Q9H334	677 aa	Predicted RBP	13.36	□□□□□ -0.27
VRK3-223	ENST00000601341	ZBTB5	O15062	677 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	PLA2G6	O60733	806 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	BACE1	P56817	501 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	NLRP5	P59047	1200 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	SNW1	Q13573	536 aa	Known RBP	13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	VGLL4	Q14135	290 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	TTLL12	Q14166	644 aa	Predicted RBP	13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	SYDE2	Q5VT97	1194 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	MAP1S	Q66K74	1059 aa	Predicted RBP	13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	WWC2	Q6AWC2	1192 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	GALNT17	Q6IS24	598 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	ARMC9	Q7Z3E5	817 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	CCAR1	Q8IX12	1150 aa	Known RBP	13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	KIAA1524	Q8TCG1	905 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	CHURC1	Q8WUH1	139 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	MTMR8	Q96EF0	704 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	BTBD18	B2RXH4	712 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	KIF28P	B7ZC32	967 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	C19orf81	C9J6K1	198 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	STXBP3	O00186	592 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	WDR46	O15213	610 aa	Known RBP	13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	AP5Z1	O43299	807 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	KRT2	P35908	639 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	MTMR2	Q13614	643 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	FAM160B2	Q86V87	743 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	NOSTRIN	Q8IVI9	506 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	CKAP2L	Q8IYA6	745 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	ANKRD13A	Q8IZ07	590 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	SHISA4	Q96DD7	197 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	ANO10	Q9NW15	660 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	FEM1B	Q9UK73	627 aa		13.35	□□□□□ -0.27
VRK3-223	ENST00000601341	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.34	□□□□□ -0.27
VRK3-223	ENST00000601341	TRIM75P	A6NK02	468 aa		13.34	□□□□□ -0.27
VRK3-223	ENST00000601341	LUZP1	Q86V48	1076 aa		13.34	□□□□□ -0.27
VRK3-223	ENST00000601341	LINC00301	Q8NCQ3	95 aa		13.34	□□□□□ -0.27
VRK3-223	ENST00000601341	RBM46	Q8TBY0	533 aa	Known RBP	13.34	□□□□□ -0.27
VRK3-223	ENST00000601341	MRPS27	Q92552	414 aa	Known RBP	13.34	□□□□□ -0.27
VRK3-223	ENST00000601341	NAT10	Q9H0A0	1025 aa	Known RBP	13.34	□□□□□ -0.27
VRK3-223	ENST00000601341	NMRK2	Q9NPI5	230 aa		13.34	□□□□□ -0.27
VRK3-223	ENST00000601341	SNCAIP	Q9Y6H5	919 aa		13.34	□□□□□ -0.27
VRK3-223	ENST00000601341	NEMF	O60524	1076 aa		13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	NAPA	P54920	295 aa		13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	DHX8	Q14562	1220 aa	Known RBP	13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	CDC37	Q16543	378 aa	Predicted RBP	13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	MYSM1	Q5VVJ2	828 aa		13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	ZNF526	Q8TF50	670 aa	Predicted RBP	13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	MRFAP1L1	Q96HT8	127 aa		13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	TTC12	Q9H892	705 aa	Predicted RBP	13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	EMILIN3	Q9NT22	766 aa		13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	PRR12	Q9ULL5	1215 aa		13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	PCDHA4	Q9UN74	947 aa		13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	AFG3L2	Q9Y4W6	797 aa		13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	DOCK1	Q14185	1865 aa		13.33	□□□□□ -0.28
VRK3-223	ENST00000601341	GNA11	P29992	359 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	ME1	P48163	572 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	ZNF75D	P51815	510 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	NR5A1	Q13285	461 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	IQCB1	Q15051	598 aa		13.32	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms