RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 OTOP1Q7RTM1 612 aa22.5■■□□□ 1.19
UPF1-209ENST00000600310 CTU1Q7Z7A3 348 aaKnown RBP22.5■■□□□ 1.19
UPF1-209ENST00000600310 CCDC144CPQ8IYA2 1237 aa22.5■■□□□ 1.19
UPF1-209ENST00000600310 MTMR8Q96EF0 704 aa22.5■■□□□ 1.19
UPF1-209ENST00000600310 MROH8Q9H579 483 aa22.5■■□□□ 1.19
UPF1-209ENST00000600310 RIOX1Q9H6W3 641 aa22.5■■□□□ 1.19
UPF1-209ENST00000600310 JMJD4Q9H9V9 463 aa22.5■■□□□ 1.19
UPF1-209ENST00000600310 RBM28Q9NW13 759 aaKnown RBP22.5■■□□□ 1.19
UPF1-209ENST00000600310 TRIM17Q9Y577 477 aa22.5■■□□□ 1.19
UPF1-209ENST00000600310 CASP8AP2Q9UKL3 1982 aa22.5■■□□□ 1.19
UPF1-209ENST00000600310 GOLGA8BA8MQT2 603 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 CYTH3O43739 400 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 ICAM1P05362 532 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 HOXD10P28358 340 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 PPP2R5BQ15173 497 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 ANKRD1Q15327 319 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 RTN1Q16799 776 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 CCDC174Q6PII3 467 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 GPR142Q7Z601 462 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 NBPF11Q86T75 865 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 NCAPG2Q86XI2 1143 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 COA7Q96BR5 231 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 VAT1LQ9HCJ6 419 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 PNMA2Q9UL42 364 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 NAP1L2Q9ULW6 460 aaPredicted RBP22.49■■□□□ 1.19
UPF1-209ENST00000600310 HPS5Q9UPZ3 1129 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 RIPK3Q9Y572 518 aa22.49■■□□□ 1.19
UPF1-209ENST00000600310 GOLGA8AA7E2F4 631 aa22.48■■□□□ 1.19
UPF1-209ENST00000600310 DHX16O60231 1041 aaKnown RBP22.48■■□□□ 1.19
UPF1-209ENST00000600310 PDIA3P30101 505 aaKnown RBP22.48■■□□□ 1.19
UPF1-209ENST00000600310 AK2P54819 239 aa22.48■■□□□ 1.19
UPF1-209ENST00000600310 CDC37Q16543 378 aaPredicted RBP22.48■■□□□ 1.19
UPF1-209ENST00000600310 PLEKHH3Q7Z736 793 aa22.48■■□□□ 1.19
UPF1-209ENST00000600310 AGBL1Q96MI9 1066 aa22.48■■□□□ 1.19
UPF1-209ENST00000600310 SPZ1Q9BXG8 430 aa22.48■■□□□ 1.19
UPF1-209ENST00000600310 FAM217BQ9NTX9 383 aaPredicted RBP22.48■■□□□ 1.19
UPF1-209ENST00000600310 NID2Q14112 1375 aa22.48■■□□□ 1.19
UPF1-209ENST00000600310 PLEKHA8P1O95397 391 aa22.47■■□□□ 1.19
UPF1-209ENST00000600310 METAP2P50579 478 aaKnown RBP eCLIP22.47■■□□□ 1.19
UPF1-209ENST00000600310 PRMT2P55345 433 aa22.47■■□□□ 1.19
UPF1-209ENST00000600310 TKFCQ3LXA3 575 aa22.47■■□□□ 1.19
UPF1-209ENST00000600310 WDR78Q5VTH9 848 aa22.47■■□□□ 1.19
UPF1-209ENST00000600310 TMTC3Q6ZXV5 915 aa22.47■■□□□ 1.19
UPF1-209ENST00000600310 SRBD1Q8N5C6 995 aaKnown RBP22.47■■□□□ 1.19
UPF1-209ENST00000600310 ZNF274Q96GC6 653 aaPredicted RBP22.47■■□□□ 1.19
UPF1-209ENST00000600310 LARP6Q9BRS8 491 aaKnown RBP22.47■■□□□ 1.19
UPF1-209ENST00000600310 CWC22Q9HCG8 908 aaKnown RBP22.47■■□□□ 1.19
UPF1-209ENST00000600310 SRRDQ9UH36 339 aa22.47■■□□□ 1.19
UPF1-209ENST00000600310 GJD2Q9UKL4 321 aa22.47■■□□□ 1.19
UPF1-209ENST00000600310 CCPG1Q9ULG6 757 aa22.47■■□□□ 1.19
UPF1-209ENST00000600310 CCDC196A0A1B0GTZ2 297 aa22.46■■□□□ 1.19
UPF1-209ENST00000600310 STRNO43815 780 aa22.46■■□□□ 1.19
UPF1-209ENST00000600310 PTPREP23469 700 aa22.46■■□□□ 1.19
UPF1-209ENST00000600310 CDC27P30260 824 aa22.46■■□□□ 1.19
UPF1-209ENST00000600310 RABEP1Q15276 862 aa22.46■■□□□ 1.19
UPF1-209ENST00000600310 QRICH1Q2TAL8 776 aa22.46■■□□□ 1.19
UPF1-209ENST00000600310 CHST13Q8NET6 341 aa22.46■■□□□ 1.19
UPF1-209ENST00000600310 COL11A1P12107 1806 aaPredicted RBP22.45■■□□□ 1.19
UPF1-209ENST00000600310 SLC4A3P48751 1232 aa22.45■■□□□ 1.18
UPF1-209ENST00000600310 PKN2Q16513 984 aaKnown RBP22.45■■□□□ 1.18
UPF1-209ENST00000600310 MORN1Q5T089 497 aa22.45■■□□□ 1.18
UPF1-209ENST00000600310 ABRAQ8N0Z2 381 aa22.45■■□□□ 1.18
UPF1-209ENST00000600310 CMTR1Q8N1G2 835 aaKnown RBP22.45■■□□□ 1.18
UPF1-209ENST00000600310 SOCS4Q8WXH5 440 aa22.45■■□□□ 1.18
UPF1-209ENST00000600310 TPCN1Q9ULQ1 816 aa22.45■■□□□ 1.18
UPF1-209ENST00000600310 IVNS1ABPQ9Y6Y0 642 aa22.45■■□□□ 1.18
UPF1-209ENST00000600310 SLC15A5A6NIM6 579 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 ZBTB5O15062 677 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 ALAS1P13196 640 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 PRKCZQ05513 592 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 GRB14Q14449 540 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.44■■□□□ 1.18
UPF1-209ENST00000600310 IL27Q8NEV9 243 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 PIGSQ96S52 555 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 NUDT12Q9BQG2 462 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 RNF146Q9NTX7 359 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 FBXO40Q9UH90 709 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 GABRQQ9UN88 632 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 PTPN22Q9Y2R2 807 aa22.44■■□□□ 1.18
UPF1-209ENST00000600310 ZSWIM8A7E2V4 1837 aa22.43■■□□□ 1.18
UPF1-209ENST00000600310 FCER1AP12319 257 aa22.43■■□□□ 1.18
UPF1-209ENST00000600310 ADD1P35611 737 aaKnown RBP22.43■■□□□ 1.18
UPF1-209ENST00000600310 FLT3LGP49771 235 aa22.43■■□□□ 1.18
UPF1-209ENST00000600310 FUT2Q10981 343 aa22.43■■□□□ 1.18
UPF1-209ENST00000600310 FBXO11Q86XK2 927 aa22.43■■□□□ 1.18
UPF1-209ENST00000600310 HOMER1Q86YM7 354 aa22.43■■□□□ 1.18
UPF1-209ENST00000600310 USP6NLQ92738 828 aa22.43■■□□□ 1.18
UPF1-209ENST00000600310 RRP36Q96EU6 259 aaKnown RBP22.43■■□□□ 1.18
UPF1-209ENST00000600310 TRERF1Q96PN7 1200 aa22.43■■□□□ 1.18
UPF1-209ENST00000600310 AMNQ9BXJ7 453 aa22.43■■□□□ 1.18
UPF1-209ENST00000600310 PNMA6FA0A0J9YX94 578 aa22.42■■□□□ 1.18
UPF1-209ENST00000600310 TAL1P17542 331 aaPredicted RBP22.42■■□□□ 1.18
UPF1-209ENST00000600310 CCT2P78371 535 aaKnown RBP22.42■■□□□ 1.18
UPF1-209ENST00000600310 MAP2K5Q13163 448 aa22.42■■□□□ 1.18
UPF1-209ENST00000600310 IRF5Q13568 498 aa22.42■■□□□ 1.18
UPF1-209ENST00000600310 CCDC82Q8N4S0 544 aa22.42■■□□□ 1.18
UPF1-209ENST00000600310 MMP19Q99542 508 aa22.42■■□□□ 1.18
UPF1-209ENST00000600310 ACAD9Q9H845 621 aa22.42■■□□□ 1.18
UPF1-209ENST00000600310 HOMER2Q9NSB8 354 aa22.42■■□□□ 1.18
UPF1-209ENST00000600310 MGAMO43451 1857 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms