RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 FAM133AQ8N9E0 248 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 PCSK9Q8NBP7 692 aaKnown RBP7.33□□□□□ -1.24
VRK3-220ENST00000600259 HERVK_113Q902F9 699 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 GLT1D1Q96MS3 346 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.33□□□□□ -1.241e-9■■■□□ 14.6
VRK3-220ENST00000600259 PRDM12Q9H4Q4 367 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 RAVER2Q9HCJ3 691 aaKnown RBP7.33□□□□□ -1.24
VRK3-220ENST00000600259 EPB41L4AQ9HCS5 686 aaPredicted RBP7.33□□□□□ -1.24
VRK3-220ENST00000600259 MTMR4Q9NYA4 1195 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 CXXC1Q9P0U4 656 aaPredicted RBP7.33□□□□□ -1.24
VRK3-220ENST00000600259 CLIP2Q9UDT6 1046 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 ZHX1Q9UKY1 873 aaPredicted RBP7.33□□□□□ -1.24
VRK3-220ENST00000600259 GNEQ9Y223 722 aaKnown RBP7.33□□□□□ -1.24
VRK3-220ENST00000600259 COG6Q9Y2V7 657 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 ZNF536O15090 1300 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 UMODL1Q5DID0 1318 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 A0A0U1RQG5 324 aaPredicted RBP7.32□□□□□ -1.24
VRK3-220ENST00000600259 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.32□□□□□ -1.24
VRK3-220ENST00000600259 TNFRSF10AO00220 468 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 SMARCA5O60264 1052 aaPredicted RBP7.32□□□□□ -1.24
VRK3-220ENST00000600259 ZBED4O75132 1171 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 HMMRO75330 724 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 C6orf222P0C671 652 aaPredicted RBP7.32□□□□□ -1.24
VRK3-220ENST00000600259 PTGS1P23219 599 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 OAZ1P54368 228 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 HNRNPUQ00839 825 aaKnown RBP eCLIP7.32□□□□□ -1.24
VRK3-220ENST00000600259 BEX3Q00994 111 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 TMEM63BQ5T3F8 832 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 TAPT1Q6NXT6 567 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 ARMCX2Q7L311 632 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 CCDC144CPQ8IYA2 1237 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 STK11IPQ8N1F8 1099 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 KBTBD3Q8NAB2 608 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 CHST13Q8NET6 341 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 ATXN2LQ8WWM7 1075 aaKnown RBP7.32□□□□□ -1.24
VRK3-220ENST00000600259 CEP95Q96GE4 821 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 ASB2Q96Q27 587 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 IL23AQ9NPF7 189 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 ARPP21Q9UBL0 812 aaPredicted RBP7.32□□□□□ -1.24
VRK3-220ENST00000600259 FEM1BQ9UK73 627 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 SYNPO2Q9UMS6 1093 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 YBX2Q9Y2T7 364 aaKnown RBP7.32□□□□□ -1.24
VRK3-220ENST00000600259 DDX49Q9Y6V7 483 aaKnown RBP7.32□□□□□ -1.24
VRK3-220ENST00000600259 MYO9BQ13459 2157 aa7.32□□□□□ -1.24
VRK3-220ENST00000600259 COL11A1P12107 1806 aaPredicted RBP7.31□□□□□ -1.24
VRK3-220ENST00000600259 MROH7Q68CQ1 1323 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 GREB1LQ9C091 1923 aaPredicted RBP7.31□□□□□ -1.24
VRK3-220ENST00000600259 BAZ2AQ9UIF9 1905 aaKnown RBP7.31□□□□□ -1.24
VRK3-220ENST00000600259 MINDY4BA8MYZ0 360 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 RAD21O60216 631 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 PRDM1O75626 825 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 COL9A1P20849 921 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 ZSCAN25Q6NSZ9 544 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 CXCL17Q6UXB2 119 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 AMOTL1Q8IY63 956 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 ANKRD35Q8N283 1001 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 TMEM199Q8N511 208 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 GMCL1P1Q8NEA9 526 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 NEDD1Q8NHV4 660 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 APPBP2Q92624 585 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 KIFC2Q96AC6 838 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 VTI1AQ96AJ9 217 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 DDRGK1Q96HY6 314 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 AGBL1Q96MI9 1066 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 PPP1R12CQ9BZL4 782 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 WNT8AQ9H1J5 351 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 MKNK2Q9HBH9 465 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 A1CFQ9NQ94 594 aaKnown RBP7.31□□□□□ -1.24
VRK3-220ENST00000600259 PDGFCQ9NRA1 345 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 FBXO40Q9UH90 709 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 RAPGEFL1Q9UHV5 662 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 DDX19BQ9UMR2 479 aa7.31□□□□□ -1.24
VRK3-220ENST00000600259 PATL2C9JE40 543 aaKnown RBP7.3□□□□□ -1.24
VRK3-220ENST00000600259 TMEM232C9JQI7 657 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 FOXP2O15409 715 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 RNF113AO15541 343 aaKnown RBP7.3□□□□□ -1.24
VRK3-220ENST00000600259 GPAA1O43292 621 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 PLA2G6O60733 806 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 TTLL1O95922 423 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 FGBP02675 491 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 FDX1P10109 184 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 MS4A1P11836 297 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 BMP3P12645 472 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 BMP1P13497 986 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 SMPD1P17405 629 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 NOVP48745 357 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 SLC4A3P48751 1232 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 TNFAIP2Q03169 654 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 ITGA7Q13683 1181 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 SLFN13Q68D06 897 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 PSRC1Q6PGN9 363 aaPredicted RBP7.3□□□□□ -1.24
VRK3-220ENST00000600259 CCDC129Q6ZRS4 1044 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 IFNL3Q8IZI9 196 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 ZNF444Q8N0Y2 327 aaPredicted RBP7.3□□□□□ -1.24
VRK3-220ENST00000600259 MIER1Q8N108 512 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 MORC4Q8TE76 937 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 PPM1EQ8WY54 764 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 SEC62Q99442 399 aaKnown RBP7.3□□□□□ -1.24
VRK3-220ENST00000600259 GAS2L1Q99501 681 aaPredicted RBP7.3□□□□□ -1.24
VRK3-220ENST00000600259 NOC4LQ9BVI4 516 aaKnown RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms