RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SH2D4BQ5SQS7 431 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 CCDC51Q96ER9 411 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 VCXQ9H320 206 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 CUEDC2Q9H467 287 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 GYG1P46976 350 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 USP26Q9BXU7 913 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 POLA2Q14181 598 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 ERFEQ4G0M1 354 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 ELMOD1Q8N336 334 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 ARMCX3Q9UH62 379 aaPredicted RBP22.48■■□□□ 1.19
UPF1-207ENST00000599848 RAB17Q9H0T7 212 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 CTTNBP2Q8WZ74 1663 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 SCG2P13521 617 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 NELFCDQ8IXH7 590 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 KRT222Q8N1A0 295 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 GIMAP8Q8ND71 665 aaPredicted RBP22.48■■□□□ 1.19
UPF1-207ENST00000599848 PI4KBQ9UBF8 816 aa22.48■■□□□ 1.19
UPF1-207ENST00000599848 ITKQ08881 620 aa22.47■■□□□ 1.19
UPF1-207ENST00000599848 RPS6KA1Q15418 735 aa22.47■■□□□ 1.19
UPF1-207ENST00000599848 A6NJR5 290 aa22.47■■□□□ 1.19
UPF1-207ENST00000599848 IGBP1P78318 339 aa22.47■■□□□ 1.19
UPF1-207ENST00000599848 HHATQ5VTY9 493 aa22.47■■□□□ 1.19
UPF1-207ENST00000599848 BBOF1Q8ND07 529 aa22.47■■□□□ 1.19
UPF1-207ENST00000599848 TESK2Q96S53 571 aa22.47■■□□□ 1.19
UPF1-207ENST00000599848 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.47■■□□□ 1.19
UPF1-207ENST00000599848 SMIM23A6NLE4 172 aa22.47■■□□□ 1.19
UPF1-207ENST00000599848 RBM6P78332 1123 aaKnown RBP22.47■■□□□ 1.19
UPF1-207ENST00000599848 PEX26Q7Z412 305 aa22.47■■□□□ 1.19
UPF1-207ENST00000599848 NLRP1Q9C000 1473 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 WDR64B1ANS9 1081 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 RPS6KA2Q15349 733 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 SESTD1Q86VW0 696 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 HAUS8Q9BT25 410 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 ZBTB33Q86T24 672 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 EPSTI1Q96J88 318 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 KDM2BQ8NHM5 1336 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 PDE8BO95263 885 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 PTPRKQ15262 1439 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 ARMCX2Q7L311 632 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 NELFBQ8WX92 580 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 AMFRQ9UKV5 643 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 ANKARQ7Z5J8 1434 aa22.46■■□□□ 1.19
UPF1-207ENST00000599848 GARSP41250 739 aaKnown RBP22.45■■□□□ 1.19
UPF1-207ENST00000599848 THAP12O43422 761 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 NLRP12P59046 1061 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 MCM6Q14566 821 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 APOBEC3FQ8IUX4 373 aaKnown RBP22.45■■□□□ 1.18
UPF1-207ENST00000599848 CCDC105Q8IYK2 499 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 FANCBQ8NB91 859 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 MED23Q9ULK4 1368 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 BMP3P12645 472 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 TERF1P54274 439 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 MYO1EQ12965 1108 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 LRRC47Q8N1G4 583 aaKnown RBP22.45■■□□□ 1.18
UPF1-207ENST00000599848 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.45■■□□□ 1.18
UPF1-207ENST00000599848 E7EWF7 191 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 GRIN3BO60391 1043 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 CLEC4GQ6UXB4 293 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 RIPOR2Q9Y4F9 1068 aa22.45■■□□□ 1.18
UPF1-207ENST00000599848 CIITAP33076 1130 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 TRAPPC10P48553 1259 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 CYP2J2P51589 502 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 KARSQ15046 597 aaKnown RBP22.44■■□□□ 1.18
UPF1-207ENST00000599848 TMEM106CQ9BVX2 250 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 SEPT9Q9UHD8 586 aaPredicted RBP22.44■■□□□ 1.18
UPF1-207ENST00000599848 SCYL2Q6P3W7 929 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 FAM167AQ96KS9 214 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 RUNDC3BQ96NL0 473 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 TRIM56Q9BRZ2 755 aaKnown RBP22.44■■□□□ 1.18
UPF1-207ENST00000599848 IMPACTQ9P2X3 320 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 SERPINB13Q9UIV8 391 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 ATF5Q9Y2D1 282 aaPredicted RBP22.44■■□□□ 1.18
UPF1-207ENST00000599848 EBAG9O00559 213 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 PPARGP37231 505 aaPredicted RBP22.44■■□□□ 1.18
UPF1-207ENST00000599848 CARD14Q9BXL6 1004 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 LRCH2Q5VUJ6 765 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 ZNF526Q8TF50 670 aaPredicted RBP22.44■■□□□ 1.18
UPF1-207ENST00000599848 ATG3Q9NT62 314 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 ATP2C2O75185 946 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 PTK2Q05397 1052 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 ALCAMQ13740 583 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 CCDC62Q6P9F0 684 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 MICAL1Q8TDZ2 1067 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 DDX17Q92841 729 aaKnown RBP22.44■■□□□ 1.18
UPF1-207ENST00000599848 NUF2Q9BZD4 464 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 VCX3BQ9H321 246 aa22.44■■□□□ 1.18
UPF1-207ENST00000599848 TNKSO95271 1327 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 CLRN2A0PK11 232 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 ASNSP08243 561 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 CFAP221Q4G0U5 840 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 EFCAB6Q5THR3 1501 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 GTF2F1P35269 517 aaKnown RBP eCLIP22.43■■□□□ 1.185e-6■■□□□ 13.8
UPF1-207ENST00000599848 GOLGA8QA0A0J9YX86 632 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 GOLGA8OA6NCC3 632 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 GOLGA8NF8WBI6 632 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 GRAPQ13588 217 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 ARHGAP44Q17R89 818 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 FAM76AQ8TAV0 307 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 KLHDC4Q8TBB5 520 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 GRAPLQ8TC17 118 aaPredicted RBP22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms