RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 TSPY8P0CW00 308 aa25.19■■□□□ 1.62
PNKP-212ENST00000599454 BMP3P12645 472 aa25.19■■□□□ 1.62
PNKP-212ENST00000599454 EPHB4P54760 987 aa25.19■■□□□ 1.62
PNKP-212ENST00000599454 TSHZ3Q63HK5 1081 aa25.19■■□□□ 1.62
PNKP-212ENST00000599454 SLFN13Q68D06 897 aa25.19■■□□□ 1.62
PNKP-212ENST00000599454 LRRC47Q8N1G4 583 aaKnown RBP25.19■■□□□ 1.62
PNKP-212ENST00000599454 MAFAQ8NHW3 353 aaPredicted RBP25.19■■□□□ 1.62
PNKP-212ENST00000599454 UPF3AQ9H1J1 476 aaKnown RBP25.19■■□□□ 1.62
PNKP-212ENST00000599454 UNC80Q8N2C7 3258 aa25.18■■□□□ 1.62
PNKP-212ENST00000599454 ERC2O15083 957 aa25.18■■□□□ 1.62
PNKP-212ENST00000599454 C6orf222P0C671 652 aaPredicted RBP25.18■■□□□ 1.62
PNKP-212ENST00000599454 PPP4R3BQ5MIZ7 849 aa25.18■■□□□ 1.62
PNKP-212ENST00000599454 TIMP1P01033 207 aa25.17■■□□□ 1.62
PNKP-212ENST00000599454 GJA9P57773 515 aa25.17■■□□□ 1.62
PNKP-212ENST00000599454 CCDC144BQ3MJ40 725 aa25.17■■□□□ 1.62
PNKP-212ENST00000599454 ARMCX2Q7L311 632 aa25.17■■□□□ 1.62
PNKP-212ENST00000599454 FGD4Q96M96 766 aa25.17■■□□□ 1.62
PNKP-212ENST00000599454 NAPBQ9H115 298 aa25.17■■□□□ 1.62
PNKP-212ENST00000599454 TBX21Q9UL17 535 aa25.17■■□□□ 1.62
PNKP-212ENST00000599454 MYADML2A6NDP7 307 aa25.16■■□□□ 1.62
PNKP-212ENST00000599454 CDK7P50613 346 aa25.16■■□□□ 1.62
PNKP-212ENST00000599454 STAT2P52630 851 aa25.16■■□□□ 1.62
PNKP-212ENST00000599454 CCDC174Q6PII3 467 aa25.16■■□□□ 1.62
PNKP-212ENST00000599454 FAM160B2Q86V87 743 aa25.16■■□□□ 1.62
PNKP-212ENST00000599454 CHURC1Q8WUH1 139 aa25.16■■□□□ 1.62
PNKP-212ENST00000599454 MYLIPQ8WY64 445 aa25.16■■□□□ 1.62
PNKP-212ENST00000599454 GMCL1Q96IK5 515 aa25.16■■□□□ 1.62
PNKP-212ENST00000599454 ACAD9Q9H845 621 aa25.16■■□□□ 1.62
PNKP-212ENST00000599454 A0A0U1RQG5 324 aaPredicted RBP25.15■■□□□ 1.62
PNKP-212ENST00000599454 HSFX4A0A1B0GTS1 333 aaPredicted RBP25.15■■□□□ 1.62
PNKP-212ENST00000599454 HSFX3A0A1B0GWH4 333 aaPredicted RBP25.15■■□□□ 1.62
PNKP-212ENST00000599454 ASGR1P07306 291 aa25.15■■□□□ 1.62
PNKP-212ENST00000599454 TFAP4Q01664 338 aa25.15■■□□□ 1.62
PNKP-212ENST00000599454 TKFCQ3LXA3 575 aa25.15■■□□□ 1.62
PNKP-212ENST00000599454 MFSD5Q6N075 450 aa25.15■■□□□ 1.62
PNKP-212ENST00000599454 CCDC144CPQ8IYA2 1237 aa25.15■■□□□ 1.62
PNKP-212ENST00000599454 TMEM232C9JQI7 657 aa25.14■■□□□ 1.62
PNKP-212ENST00000599454 FOSL2P15408 326 aa25.14■■□□□ 1.62
PNKP-212ENST00000599454 NKX3-2P78367 333 aa25.14■■□□□ 1.62
PNKP-212ENST00000599454 PPARAQ07869 468 aa25.14■■□□□ 1.62
PNKP-212ENST00000599454 GNASQ5JWF2 1037 aa25.14■■□□□ 1.62
PNKP-212ENST00000599454 FAM133AQ8N9E0 248 aa25.14■■□□□ 1.62
PNKP-212ENST00000599454 STAG1Q8WVM7 1258 aa25.14■■□□□ 1.62
PNKP-212ENST00000599454 FSD1Q9BTV5 496 aa25.14■■□□□ 1.62
PNKP-212ENST00000599454 LRRC37A2A6NM11 1700 aa25.14■■□□□ 1.61
PNKP-212ENST00000599454 ARVCFO00192 962 aa25.13■■□□□ 1.61
PNKP-212ENST00000599454 ADCY6O43306 1168 aa25.13■■□□□ 1.61
PNKP-212ENST00000599454 PLA2G6O60733 806 aa25.13■■□□□ 1.61
PNKP-212ENST00000599454 SLC1A4P43007 532 aa25.13■■□□□ 1.61
PNKP-212ENST00000599454 PPIGQ13427 754 aaKnown RBP eCLIP25.13■■□□□ 1.611e-6■■■■□ 22.5
PNKP-212ENST00000599454 ZMYM1Q5SVZ6 1142 aa25.13■■□□□ 1.61
PNKP-212ENST00000599454 PI4K2BQ8TCG2 481 aa25.13■■□□□ 1.61
PNKP-212ENST00000599454 VTI1AQ96AJ9 217 aa25.13■■□□□ 1.61
PNKP-212ENST00000599454 KATNBL1Q9H079 304 aa25.13■■□□□ 1.61
PNKP-212ENST00000599454 HOMER2Q9NSB8 354 aa25.13■■□□□ 1.61
PNKP-212ENST00000599454 ISY1Q9ULR0 285 aaKnown RBP25.13■■□□□ 1.61
PNKP-212ENST00000599454 TLR3O15455 904 aaKnown RBP25.12■■□□□ 1.61
PNKP-212ENST00000599454 SEC62Q99442 399 aaKnown RBP25.12■■□□□ 1.61
PNKP-212ENST00000599454 RNF146Q9NTX7 359 aa25.12■■□□□ 1.61
PNKP-212ENST00000599454 ASB14A6NK59 587 aa25.11■■□□□ 1.61
PNKP-212ENST00000599454 DNAJB2P25686 324 aa25.11■■□□□ 1.61
PNKP-212ENST00000599454 IKQ13123 557 aaPredicted RBP25.11■■□□□ 1.61
PNKP-212ENST00000599454 A1CFQ9NQ94 594 aaKnown RBP25.11■■□□□ 1.61
PNKP-212ENST00000599454 ZNF536O15090 1300 aa25.11■■□□□ 1.61
PNKP-212ENST00000599454 LCTP09848 1927 aa25.1■■□□□ 1.61
PNKP-212ENST00000599454 IRX5P78411 483 aaPredicted RBP25.1■■□□□ 1.61
PNKP-212ENST00000599454 CNTN2Q02246 1040 aa25.1■■□□□ 1.61
PNKP-212ENST00000599454 TNFAIP2Q03169 654 aa25.1■■□□□ 1.61
PNKP-212ENST00000599454 FAM126BQ8IXS8 530 aa25.1■■□□□ 1.61
PNKP-212ENST00000599454 TMEM199Q8N511 208 aa25.1■■□□□ 1.61
PNKP-212ENST00000599454 BUD13Q9BRD0 619 aaKnown RBP eCLIP25.1■■□□□ 1.611e-8■■□□□ 13.2
PNKP-212ENST00000599454 CTAGE5O15320 804 aa25.09■■□□□ 1.61
PNKP-212ENST00000599454 CABYRO75952 493 aa25.09■■□□□ 1.61
PNKP-212ENST00000599454 CCDC129Q6ZRS4 1044 aa25.09■■□□□ 1.61
PNKP-212ENST00000599454 TRERF1Q96PN7 1200 aa25.09■■□□□ 1.61
PNKP-212ENST00000599454 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.09■■□□□ 1.61
PNKP-212ENST00000599454 TSPY2A6NKD2 308 aa25.08■■□□□ 1.61
PNKP-212ENST00000599454 MCCP23508 829 aa25.08■■□□□ 1.61
PNKP-212ENST00000599454 RCSD1Q6JBY9 416 aa25.08■■□□□ 1.61
PNKP-212ENST00000599454 PSRC1Q6PGN9 363 aaPredicted RBP25.08■■□□□ 1.61
PNKP-212ENST00000599454 AGBL1Q96MI9 1066 aa25.08■■□□□ 1.61
PNKP-212ENST00000599454 SEZ6LQ9BYH1 1024 aa25.08■■□□□ 1.61
PNKP-212ENST00000599454 STX8Q9UNK0 236 aa25.08■■□□□ 1.61
PNKP-212ENST00000599454 SOWAHBA6NEL2 793 aa25.07■■□□□ 1.6
PNKP-212ENST00000599454 MX1P20591 662 aa25.07■■□□□ 1.6
PNKP-212ENST00000599454 TMEM240Q5SV17 173 aa25.07■■□□□ 1.6
PNKP-212ENST00000599454 RASIP1Q5U651 963 aa25.07■■□□□ 1.6
PNKP-212ENST00000599454 NOL8Q76FK4 1167 aaKnown RBP25.07■■□□□ 1.6
PNKP-212ENST00000599454 TIFAQ96CG3 184 aa25.07■■□□□ 1.6
PNKP-212ENST00000599454 GNEQ9Y223 722 aaKnown RBP25.07■■□□□ 1.6
PNKP-212ENST00000599454 TTC28Q96AY4 2481 aa25.07■■□□□ 1.6
PNKP-212ENST00000599454 GBF1Q92538 1859 aa25.06■■□□□ 1.6
PNKP-212ENST00000599454 ZEB2O60315 1214 aa25.06■■□□□ 1.6
PNKP-212ENST00000599454 CD4P01730 458 aa25.06■■□□□ 1.6
PNKP-212ENST00000599454 ALAS1P13196 640 aa25.06■■□□□ 1.6
PNKP-212ENST00000599454 TLK2Q86UE8 772 aa25.06■■□□□ 1.6
PNKP-212ENST00000599454 SLC43A3Q8NBI5 491 aa25.06■■□□□ 1.6
PNKP-212ENST00000599454 AP5M1Q9H0R1 490 aa25.06■■□□□ 1.6
PNKP-212ENST00000599454 ZNF576Q9H609 170 aa25.06■■□□□ 1.6
PNKP-212ENST00000599454 PRR12Q9ULL5 1215 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms