RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 NKX1-1Q15270 411 aaPredicted RBP13.88□□□□□ -0.19
USHBP1-207ENST00000597928 TXNRD1Q16881 649 aa13.88□□□□□ -0.19
USHBP1-207ENST00000597928 DPP8Q6V1X1 898 aaPredicted RBP13.88□□□□□ -0.19
USHBP1-207ENST00000597928 FAM196AQ6ZSG2 479 aa13.88□□□□□ -0.19
USHBP1-207ENST00000597928 CCDC155Q8N6L0 562 aa13.88□□□□□ -0.19
USHBP1-207ENST00000597928 CEP112Q8N8E3 955 aa13.88□□□□□ -0.19
USHBP1-207ENST00000597928 NOA1Q8NC60 698 aaKnown RBP13.88□□□□□ -0.19
USHBP1-207ENST00000597928 SMARCC1Q92922 1105 aaPredicted RBP13.88□□□□□ -0.19
USHBP1-207ENST00000597928 GTPBP6O43824 516 aaPredicted RBP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 PMS1P54277 932 aaKnown RBP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 GABPB1Q06547 395 aaPredicted RBP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 C2orf54Q08AI8 447 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 MSL1Q68DK7 614 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 CC2D1AQ6P1N0 951 aaPredicted RBP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 TMC4Q7Z404 712 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 TMTC1Q8IUR5 882 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 GPR161Q8N6U8 529 aaKnown RBP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 LINC00116Q8NCU8 138 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 MYO6Q9UM54 1294 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 PHLPP2Q6ZVD8 1323 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 MEIS1O00470 390 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 KIF20AO95235 890 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 RAPGEF1Q13905 1077 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 NR1I3Q14994 352 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 TMEM266Q2M3C6 531 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 TCP11X2Q5H9J9 407 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 DCAF17Q5H9S7 520 aaPredicted RBP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 CDC23Q9UJX2 597 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 BCS1LQ9Y276 419 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 LMTK3Q96Q04 1460 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 CAMTA1Q9Y6Y1 1673 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 ERCC5P28715 1186 aaPredicted RBP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 CYLC1P35663 651 aaPredicted RBP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 PLA2G4AP47712 749 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 NONOQ15233 471 aaKnown RBP eCLIP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 ALX1Q15699 326 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 TRAPPC3LQ5T215 181 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 CNOT6LQ96LI5 555 aaKnown RBP13.87□□□□□ -0.19
USHBP1-207ENST00000597928 MED15Q96RN5 788 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 TMEM47Q9BQJ4 181 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 PHF20Q9BVI0 1012 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 EHD2Q9NZN4 543 aa13.87□□□□□ -0.19
USHBP1-207ENST00000597928 XDHP47989 1333 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 USP17L5A8MUK1 530 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 KRT86O43790 486 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 ZEB2O60315 1214 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 UBXN2AP68543 259 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 CYP4A11Q02928 519 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 SRGAP1Q7Z6B7 1085 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 ACBD3Q9H3P7 528 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 USP8P40818 1118 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 SV2BQ7L1I2 683 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 SPICE1Q8N0Z3 855 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 ABHD10Q9NUJ1 306 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 CALCOCO1Q9P1Z2 691 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 PPP1R1BQ9UD71 204 aaPredicted RBP13.86□□□□□ -0.19
USHBP1-207ENST00000597928 ADD3Q9UEY8 706 aaKnown RBP13.86□□□□□ -0.19
USHBP1-207ENST00000597928 PPP1R3GB7ZBB8 358 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 ATP2C2O75185 946 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 SASH3O75995 380 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 LDHCP07864 332 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 PLEKP08567 350 aaPredicted RBP13.86□□□□□ -0.19
USHBP1-207ENST00000597928 TAL1P17542 331 aaPredicted RBP13.86□□□□□ -0.19
USHBP1-207ENST00000597928 VSNL1P62760 191 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 KRT79Q5XKE5 535 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 ZNF804AQ7Z570 1209 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 ADAT2Q7Z6V5 191 aaKnown RBP13.86□□□□□ -0.19
USHBP1-207ENST00000597928 REXO1Q8N1G1 1221 aaKnown RBP13.86□□□□□ -0.19
USHBP1-207ENST00000597928 PLCD3Q8N3E9 789 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 RDH13Q8NBN7 331 aa13.86□□□□□ -0.19
USHBP1-207ENST00000597928 RIOK1Q9BRS2 568 aaKnown RBP13.86□□□□□ -0.19
USHBP1-207ENST00000597928 BSDC1Q9NW68 430 aaPredicted RBP13.86□□□□□ -0.19
USHBP1-207ENST00000597928 NCK2O43639 380 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 USO1O60763 962 aaKnown RBP13.85□□□□□ -0.19
USHBP1-207ENST00000597928 CALCRLQ16602 461 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 MLXIPQ9HAP2 919 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 ZBTB21Q9ULJ3 1066 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 FHOD1Q9Y613 1164 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 NALCNQ8IZF0 1738 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 NDUFA10O95299 355 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 ERVK-24P63145 666 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 STK4Q13043 487 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 SEC23AQ15436 765 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 HERC4Q5GLZ8 1057 aaPredicted RBP13.85□□□□□ -0.19
USHBP1-207ENST00000597928 KCTD16Q68DU8 428 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 SLC30A10Q6XR72 485 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 SND1Q7KZF4 910 aaKnown RBP eCLIP13.85□□□□□ -0.19
USHBP1-207ENST00000597928 KIAA0825Q8IV33 1275 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 FNBP4Q8N3X1 1017 aaPredicted RBP13.85□□□□□ -0.19
USHBP1-207ENST00000597928 PNKPQ96T60 521 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 PCDHA4Q9UN74 947 aa13.85□□□□□ -0.19
USHBP1-207ENST00000597928 TTF2Q9UNY4 1162 aaKnown RBP13.85□□□□□ -0.19
USHBP1-207ENST00000597928 UBAP1LF5GYI3 381 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 FANCGO15287 622 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 MOCS3O95396 460 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 POTEDQ86YR6 584 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 TRIML1Q8N9V2 468 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 DISC1Q9NRI5 854 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 MRFAP1Q9Y605 127 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 CACNA1FO60840 1977 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms