RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 MYH6P13533 1939 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 PLEKHA8P1O95397 391 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 SMARCA1P28370 1054 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 PDIA3P30101 505 aaKnown RBP16.68■□□□□ 0.26
VRK3-213ENST00000597215 PSMC4P43686 418 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 SNAP25P60880 206 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 CDC37Q16543 378 aaPredicted RBP16.68■□□□□ 0.26
VRK3-213ENST00000597215 SNRNP48Q6IEG0 339 aaKnown RBP16.68■□□□□ 0.26
VRK3-213ENST00000597215 TMTC3Q6ZXV5 915 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 PORCNQ9H237 461 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 RIOX1Q9H6W3 641 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 JMJD4Q9H9V9 463 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 CWC22Q9HCG8 908 aaKnown RBP16.68■□□□□ 0.26
VRK3-213ENST00000597215 VAT1LQ9HCJ6 419 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 HPS5Q9UPZ3 1129 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 ZSWIM8A7E2V4 1837 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 ZNF536O15090 1300 aa16.68■□□□□ 0.26
VRK3-213ENST00000597215 BAZ2BQ9UIF8 2168 aaKnown RBP16.67■□□□□ 0.26
VRK3-213ENST00000597215 TNPO2O14787 897 aaKnown RBP16.67■□□□□ 0.26
VRK3-213ENST00000597215 ST18O60284 1047 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 FMNL1O95466 1100 aaPredicted RBP16.67■□□□□ 0.26
VRK3-213ENST00000597215 ICAM1P05362 532 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 TKFCQ3LXA3 575 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 WDR78Q5VTH9 848 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 NBPF11Q86T75 865 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 NCAPG2Q86XI2 1143 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 SRBD1Q8N5C6 995 aaKnown RBP16.67■□□□□ 0.26
VRK3-213ENST00000597215 LARP6Q9BRS8 491 aaKnown RBP16.67■□□□□ 0.26
VRK3-213ENST00000597215 ARHGAP39Q9C0H5 1083 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 MROH8Q9H579 483 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 EFCC1Q9HA90 598 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 CCPG1Q9ULG6 757 aa16.67■□□□□ 0.26
VRK3-213ENST00000597215 ZBTB5O15062 677 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 CYTH3O43739 400 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 ECM2O94769 699 aaPredicted RBP16.66■□□□□ 0.26
VRK3-213ENST00000597215 GNRH1P01148 92 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 ERCC3P19447 782 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 CDC27P30260 824 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 SLC4A3P48751 1232 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 SLC35G1Q2M3R5 365 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 QRICH1Q2TAL8 776 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 NOL8Q76FK4 1167 aaKnown RBP16.66■□□□□ 0.26
VRK3-213ENST00000597215 PLEKHH3Q7Z736 793 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 COA7Q96BR5 231 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 MTMR8Q96EF0 704 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 TRIM47Q96LD4 638 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 AGBL1Q96MI9 1066 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 FAM217BQ9NTX9 383 aaPredicted RBP16.66■□□□□ 0.26
VRK3-213ENST00000597215 TPCN1Q9ULQ1 816 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 IVNS1ABPQ9Y6Y0 642 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 PLXNB2O15031 1838 aa16.66■□□□□ 0.26
VRK3-213ENST00000597215 HOXD10P28358 340 aa16.65■□□□□ 0.26
VRK3-213ENST00000597215 CTGFP29279 349 aa16.65■□□□□ 0.26
VRK3-213ENST00000597215 CCT2P78371 535 aaKnown RBP16.65■□□□□ 0.26
VRK3-213ENST00000597215 STK3Q13188 491 aa16.65■□□□□ 0.26
VRK3-213ENST00000597215 GPR142Q7Z601 462 aa16.65■□□□□ 0.26
VRK3-213ENST00000597215 FBXO11Q86XK2 927 aa16.65■□□□□ 0.26
VRK3-213ENST00000597215 HOMER1Q86YM7 354 aa16.65■□□□□ 0.26
VRK3-213ENST00000597215 CMTR1Q8N1G2 835 aaKnown RBP16.65■□□□□ 0.26
VRK3-213ENST00000597215 CHST13Q8NET6 341 aa16.65■□□□□ 0.26
VRK3-213ENST00000597215 RRP36Q96EU6 259 aaKnown RBP16.65■□□□□ 0.26
VRK3-213ENST00000597215 SLKQ9H2G2 1235 aaPredicted RBP16.65■□□□□ 0.26
VRK3-213ENST00000597215 SEC63Q9UGP8 760 aaKnown RBP16.65■□□□□ 0.26
VRK3-213ENST00000597215 FBXO40Q9UH90 709 aa16.65■□□□□ 0.26
VRK3-213ENST00000597215 CNTNAP5Q8WYK1 1306 aa16.65■□□□□ 0.26
VRK3-213ENST00000597215 DOCK3Q8IZD9 2030 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 PNMA6FA0A0J9YX94 578 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 ALAS1P13196 640 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 ADD1P35611 737 aaKnown RBP16.64■□□□□ 0.25
VRK3-213ENST00000597215 CAP1Q01518 475 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 TRAF1Q13077 416 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 CTU1Q7Z7A3 348 aaKnown RBP16.64■□□□□ 0.25
VRK3-213ENST00000597215 CCDC82Q8N4S0 544 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 PIGSQ96S52 555 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 NCOA5Q9HCD5 579 aaKnown RBP16.64■□□□□ 0.25
VRK3-213ENST00000597215 HOMER2Q9NSB8 354 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 RNF146Q9NTX7 359 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 LIMCH1Q9UPQ0 1083 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 RIPK3Q9Y572 518 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 TRIM17Q9Y577 477 aa16.64■□□□□ 0.25
VRK3-213ENST00000597215 CPLX1O14810 134 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 STRNO43815 780 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 PFKFB2O60825 505 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 PRMT2P55345 433 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 FUT2Q10981 343 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 USH1GQ495M9 461 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 CPLX2Q6PUV4 134 aaKnown RBP16.63■□□□□ 0.25
VRK3-213ENST00000597215 OTOP1Q7RTM1 612 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 SOCS4Q8WXH5 440 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 PIBF1Q8WXW3 757 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 TRERF1Q96PN7 1200 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 AMNQ9BXJ7 453 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 ACAD9Q9H845 621 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 SRRDQ9UH36 339 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 SMCHD1A6NHR9 2005 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 ABCB11O95342 1321 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 ZNF236Q9UL36 1845 aa16.63■□□□□ 0.25
VRK3-213ENST00000597215 SLC15A5A6NIM6 579 aa16.62■□□□□ 0.25
VRK3-213ENST00000597215 FCER1AP12319 257 aa16.62■□□□□ 0.25
VRK3-213ENST00000597215 IFNAR1P17181 557 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms