RNA–Protein interactions for RNA: ENST00000592927.5

DDX39A-219, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-219ENST00000592927 NDUFB10O96000 172 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 FGD1P98174 961 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 COL9A3Q14050 684 aaPredicted RBP13.85□□□□□ -0.19
DDX39A-219ENST00000592927 TOB2Q14106 344 aaPredicted RBP13.85□□□□□ -0.19
DDX39A-219ENST00000592927 SEC23AQ15436 765 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 SHHQ15465 462 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 KIAA1755Q5JYT7 1200 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 SLFN13Q68D06 897 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 Q6ZUG5 572 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 TMTC2Q8N394 836 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 ANKRD13CQ8N6S4 541 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 SMCR8Q8TEV9 937 aaPredicted RBP13.85□□□□□ -0.19
DDX39A-219ENST00000592927 CHMP4CQ96CF2 233 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 LRRC2Q9BYS8 371 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 RPAP3Q9H6T3 665 aaPredicted RBP13.85□□□□□ -0.19
DDX39A-219ENST00000592927 CWC22Q9HCG8 908 aaKnown RBP13.85□□□□□ -0.19
DDX39A-219ENST00000592927 MTMR7Q9Y216 660 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 SLC45A1Q9Y2W3 748 aa13.85□□□□□ -0.19
DDX39A-219ENST00000592927 USP17L15C9J2P7 530 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 USP17L13C9JLJ4 530 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 USP17L11C9JVI0 530 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 USP17L18D6R9N7 530 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 USP17L22D6RA61 530 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 USP17L17D6RBQ6 530 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 USP17L19D6RCP7 530 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 USP17L20D6RJB6 530 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 SH2B2O14492 632 aaPredicted RBP13.84□□□□□ -0.19
DDX39A-219ENST00000592927 WDR46O15213 610 aaKnown RBP13.84□□□□□ -0.19
DDX39A-219ENST00000592927 SLC1A4P43007 532 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 USP17L24Q0WX57 530 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 NFXL1Q6ZNB6 911 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 PNMA1Q8ND90 353 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 TCEANC2Q96MN5 208 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 TANGO6Q9C0B7 1094 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 LY9Q9HBG7 655 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 PNMA3Q9UL41 463 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 ISY1Q9ULR0 285 aaKnown RBP13.84□□□□□ -0.19
DDX39A-219ENST00000592927 CIZ1Q9ULV3 898 aaPredicted RBP13.84□□□□□ -0.19
DDX39A-219ENST00000592927 SYNGAP1Q96PV0 1343 aa13.84□□□□□ -0.19
DDX39A-219ENST00000592927 CCDC69A6NI79 296 aa13.83□□□□□ -0.2
DDX39A-219ENST00000592927 BMP3P12645 472 aa13.83□□□□□ -0.2
DDX39A-219ENST00000592927 HOXA7P31268 230 aaPredicted RBP13.83□□□□□ -0.2
DDX39A-219ENST00000592927 LIFRP42702 1097 aa13.83□□□□□ -0.2
DDX39A-219ENST00000592927 IRX3P78415 501 aaPredicted RBP13.83□□□□□ -0.2
DDX39A-219ENST00000592927 SMAD3P84022 425 aaKnown RBP13.83□□□□□ -0.2
DDX39A-219ENST00000592927 FAM83BQ5T0W9 1011 aa13.83□□□□□ -0.2
DDX39A-219ENST00000592927 CATIPQ7Z7H3 387 aa13.83□□□□□ -0.2
DDX39A-219ENST00000592927 DCAF4Q8WV16 495 aa13.83□□□□□ -0.2
DDX39A-219ENST00000592927 GMCL1Q96IK5 515 aa13.83□□□□□ -0.2
DDX39A-219ENST00000592927 NUP88Q99567 741 aaPredicted RBP13.83□□□□□ -0.2
DDX39A-219ENST00000592927 SENP2Q9HC62 589 aa13.83□□□□□ -0.2
DDX39A-219ENST00000592927 GPHNQ9NQX3 736 aaPredicted RBP13.83□□□□□ -0.2
DDX39A-219ENST00000592927 GJD2Q9UKL4 321 aa13.83□□□□□ -0.2
DDX39A-219ENST00000592927 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.83□□□□□ -0.2
DDX39A-219ENST00000592927 EVCP57679 992 aa13.82□□□□□ -0.2
DDX39A-219ENST00000592927 CCDC96Q2M329 555 aa13.82□□□□□ -0.2
DDX39A-219ENST00000592927 C9orf50Q5SZB4 431 aa13.82□□□□□ -0.2
DDX39A-219ENST00000592927 CATSPERGQ6ZRH7 1159 aa13.82□□□□□ -0.2
DDX39A-219ENST00000592927 NOL8Q76FK4 1167 aaKnown RBP13.82□□□□□ -0.2
DDX39A-219ENST00000592927 ZNF274Q96GC6 653 aaPredicted RBP13.82□□□□□ -0.2
DDX39A-219ENST00000592927 ASCC2Q9H1I8 757 aaPredicted RBP13.82□□□□□ -0.2
DDX39A-219ENST00000592927 MGAMO43451 1857 aa13.82□□□□□ -0.2
DDX39A-219ENST00000592927 CDH23Q9H251 3354 aa13.82□□□□□ -0.2
DDX39A-219ENST00000592927 FLOT1O75955 427 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 PDHBP11177 359 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 PRKAR2AP13861 404 aaKnown RBP13.81□□□□□ -0.2
DDX39A-219ENST00000592927 COG2Q14746 738 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 ME3Q16798 604 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 SYNE3Q6ZMZ3 975 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 SGMS1Q86VZ5 419 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 ADAMTS19Q8TE59 1207 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 TRIB2Q92519 343 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 BRF1Q92994 677 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 UHRF1Q96T88 793 aaPredicted RBP13.81□□□□□ -0.2
DDX39A-219ENST00000592927 HOXC10Q9NYD6 342 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 CHMP5Q9NZZ3 219 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 TPCN1Q9ULQ1 816 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 SLC12A7Q9Y666 1083 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 LOC285556D6RIA3 1793 aa13.81□□□□□ -0.2
DDX39A-219ENST00000592927 TMEM232C9JQI7 657 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 PARP1P09874 1014 aaKnown RBP13.8□□□□□ -0.2
DDX39A-219ENST00000592927 DDIT3P35638 169 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 IKQ13123 557 aaPredicted RBP13.8□□□□□ -0.2
DDX39A-219ENST00000592927 MAP3K21Q5TCX8 1036 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 SAMD1Q6SPF0 538 aaPredicted RBP13.8□□□□□ -0.2
DDX39A-219ENST00000592927 KCTD1Q719H9 257 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 ZNF654Q8IZM8 581 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 SPRYD3Q8NCJ5 442 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 CHURC1Q8WUH1 139 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 NUP133Q8WUM0 1156 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 ATXN2LQ8WWM7 1075 aaKnown RBP13.8□□□□□ -0.2
DDX39A-219ENST00000592927 ASB2Q96Q27 587 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 P2RX7Q99572 595 aaKnown RBP13.8□□□□□ -0.2
DDX39A-219ENST00000592927 SLKQ9H2G2 1235 aaPredicted RBP13.8□□□□□ -0.2
DDX39A-219ENST00000592927 GPCPD1Q9NPB8 672 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 PRKAG2Q9UGJ0 569 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 FEM1BQ9UK73 627 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 FRMPD2Q68DX3 1309 aaPredicted RBP13.8□□□□□ -0.2
DDX39A-219ENST00000592927 PTPRFP10586 1907 aa13.8□□□□□ -0.2
DDX39A-219ENST00000592927 PFKFB2O60825 505 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms