RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 KIFC2Q96AC6 838 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 DDX11Q96FC9 970 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 FAM161BQ96MY7 647 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 CDX2Q99626 313 aaPredicted RBP13.99□□□□□ -0.17
CLIP3-204ENST00000590559 ABHD16BQ9H3Z7 469 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.99□□□□□ -0.17
CLIP3-204ENST00000590559 FBXO40Q9UH90 709 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.99□□□□□ -0.17
CLIP3-204ENST00000590559 XIRP2A4UGR9 3374 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 ELP1O95163 1332 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 BMP3P12645 472 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 GJA9P57773 515 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 PDE4BQ07343 736 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 PPARAQ07869 468 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 CCDC144BQ3MJ40 725 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 LRRC47Q8N1G4 583 aaKnown RBP13.98□□□□□ -0.17
CLIP3-204ENST00000590559 FAM133AQ8N9E0 248 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 NUP133Q8WUM0 1156 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 GMCL1Q96IK5 515 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 TBX21Q9UL17 535 aa13.98□□□□□ -0.17
CLIP3-204ENST00000590559 ERC2O15083 957 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 PQBP1O60828 265 aaKnown RBP13.97□□□□□ -0.17
CLIP3-204ENST00000590559 APPP05067 770 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 TSPY3P0CV98 308 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 TSPY8P0CW00 308 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 TFAP4Q01664 338 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 LRRFIP1Q32MZ4 808 aaKnown RBP13.97□□□□□ -0.17
CLIP3-204ENST00000590559 SLFN13Q68D06 897 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 ARMCX2Q7L311 632 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.97□□□□□ -0.17
CLIP3-204ENST00000590559 ANKRD35Q8N283 1001 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 STARD7Q9NQZ5 370 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 IL17RBQ9NRM6 502 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 TMEM39AQ9NV64 488 aa13.97□□□□□ -0.17
CLIP3-204ENST00000590559 ASTN1O14525 1302 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 TMEM265A0A087WTH1 108 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 SOWAHBA6NEL2 793 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 TMEM232C9JQI7 657 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 TIMP1P01033 207 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 ASGR1P07306 291 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 FGRP09769 529 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 RAG1P15918 1043 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 STAT2P52630 851 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 CNTN2Q02246 1040 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 CCDC144CPQ8IYA2 1237 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 STAG1Q8WVM7 1258 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 COL25A1Q9BXS0 654 aaPredicted RBP13.96□□□□□ -0.17
CLIP3-204ENST00000590559 NACAP1Q9BZK3 213 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 A1CFQ9NQ94 594 aaKnown RBP13.96□□□□□ -0.17
CLIP3-204ENST00000590559 ANAPC4Q9UJX5 808 aa13.96□□□□□ -0.17
CLIP3-204ENST00000590559 ZHX1Q9UKY1 873 aaPredicted RBP13.96□□□□□ -0.17
CLIP3-204ENST00000590559 GBF1Q92538 1859 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 DCDC2CA8MYV0 355 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 FPGSQ05932 587 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 RASIP1Q5U651 963 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 C16orf59Q7L2K0 433 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 FAM160B2Q86V87 743 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 SLC43A3Q8NBI5 491 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 PCSK9Q8NBP7 692 aaKnown RBP13.95□□□□□ -0.18
CLIP3-204ENST00000590559 CHURC1Q8WUH1 139 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 RNPC3Q96LT9 517 aaKnown RBP13.95□□□□□ -0.18
CLIP3-204ENST00000590559 AGBL1Q96MI9 1066 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 NAPBQ9H115 298 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 ACAD9Q9H845 621 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 INCENPQ9NQS7 918 aa13.95□□□□□ -0.18
CLIP3-204ENST00000590559 GNEQ9Y223 722 aaKnown RBP13.95□□□□□ -0.18
CLIP3-204ENST00000590559 MROH7Q68CQ1 1323 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.94□□□□□ -0.18
CLIP3-204ENST00000590559 ARVCFO00192 962 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 CD4P01730 458 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 SLC3A2P08195 630 aaKnown RBP13.94□□□□□ -0.18
CLIP3-204ENST00000590559 C6orf222P0C671 652 aaPredicted RBP13.94□□□□□ -0.18
CLIP3-204ENST00000590559 MX1P20591 662 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 SLC4A3P48751 1232 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 TKFCQ3LXA3 575 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 VPS53Q5VIR6 699 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 RCSD1Q6JBY9 416 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 MFSD5Q6N075 450 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 CCDC129Q6ZRS4 1044 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 RASGRP2Q7LDG7 609 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 FAM126BQ8IXS8 530 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 MYLIPQ8WY64 445 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 GLT1D1Q96MS3 346 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 FSD1Q9BTV5 496 aa13.94□□□□□ -0.18
CLIP3-204ENST00000590559 CTDP1Q9Y5B0 961 aaPredicted RBP13.94□□□□□ -0.18
CLIP3-204ENST00000590559 ORC4O43929 436 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 NMT2O60551 498 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 MCCP23508 829 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 SLC1A4P43007 532 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 CTDSPL2Q05D32 466 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 ALX1Q15699 326 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 PPP4R3BQ5MIZ7 849 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 MORC4Q8TE76 937 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLIP3-204ENST00000590559 HOMER2Q9NSB8 354 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 RNF146Q9NTX7 359 aa13.93□□□□□ -0.18
CLIP3-204ENST00000590559 A0A0U1RQG5 324 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-204ENST00000590559 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-204ENST00000590559 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-204ENST00000590559 MUM1L1Q5H9M0 696 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms