RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ZNF287Q9HBT7 754 aa13.33□□□□□ -0.28
SMAD4-211ENST00000590499 COL11A1P12107 1806 aaPredicted RBP13.32□□□□□ -0.28
SMAD4-211ENST00000590499 FAM187AA6NFU0 413 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 WDR46O15213 610 aaKnown RBP13.32□□□□□ -0.28
SMAD4-211ENST00000590499 GDF9O60383 454 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 FGAP02671 866 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 FGRP09769 529 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 FLT3LGP49771 235 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 PDE4BQ07343 736 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 IRF5Q13568 498 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 NEDD1Q8NHV4 660 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 RAET1EQ8TD07 263 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 SH3TC2Q8TF17 1288 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 NYAP2Q9P242 653 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 GJD2Q9UKL4 321 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 RABGAP1Q9Y3P9 1069 aa13.32□□□□□ -0.28
SMAD4-211ENST00000590499 HIP1O00291 1037 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 SLC3A2P08195 630 aaKnown RBP13.31□□□□□ -0.28
SMAD4-211ENST00000590499 GRK4P32298 578 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 CTDSPL2Q05D32 466 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 ZNF697Q5TEC3 545 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 NBPF11Q86T75 865 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 ZNF444Q8N0Y2 327 aaPredicted RBP13.31□□□□□ -0.28
SMAD4-211ENST00000590499 SPICE1Q8N0Z3 855 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 COA7Q96BR5 231 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 CEP95Q96GE4 821 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 PORCNQ9H237 461 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 DIAPH3Q9NSV4 1193 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 MTMR4Q9NYA4 1195 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 BTBD7Q9P203 1132 aa13.31□□□□□ -0.28
SMAD4-211ENST00000590499 ORC4O43929 436 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 ATP2B2Q01814 1243 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 COG2Q14746 738 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 CWC27Q6UX04 472 aaKnown RBP13.3□□□□□ -0.28
SMAD4-211ENST00000590499 MKL1Q969V6 931 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 PAGR1Q9BTK6 254 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 TANGO6Q9C0B7 1094 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 IL25Q9H293 177 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 GOPCQ9HD26 462 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 INCENPQ9NQS7 918 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 SYNPO2Q9UMS6 1093 aa13.3□□□□□ -0.28
SMAD4-211ENST00000590499 TNFRSF10AO00220 468 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 TULP1O00294 542 aaPredicted RBP13.29□□□□□ -0.28
SMAD4-211ENST00000590499 ADCY3O60266 1144 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 NDUFB10O96000 172 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 MAPK4P31152 587 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 NOVP48745 357 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 MFAP1P55081 439 aaKnown RBP13.29□□□□□ -0.28
SMAD4-211ENST00000590499 TFAP4Q01664 338 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 FAM47AQ5JRC9 791 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 USP6NLQ92738 828 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 HOXC10Q9NYD6 342 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 ADAMTS5Q9UNA0 930 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 ZNF236Q9UL36 1845 aa13.29□□□□□ -0.28
SMAD4-211ENST00000590499 ST8SIA5O15466 376 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 FLOT1O75955 427 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 TTLL1O95922 423 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 S1PR4O95977 384 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 TSPY3P0CV98 308 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 TSPY8P0CW00 308 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 ELNP15502 786 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 MLLT1Q03111 559 aaPredicted RBP13.28□□□□□ -0.28
SMAD4-211ENST00000590499 MTFR1Q15390 333 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 MORN1Q5T089 497 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 FAM83BQ5T0W9 1011 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 GPR142Q7Z601 462 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 TBC1D10CQ8IV04 446 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 MB21D1Q8N884 522 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 GMCL1P1Q8NEA9 526 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 ATG4CQ96DT6 458 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 IL17RBQ9NRM6 502 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 CLIP2Q9UDT6 1046 aa13.28□□□□□ -0.28
SMAD4-211ENST00000590499 F5H6K3 240 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 CFHP08603 1231 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 HAND2P61296 217 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 CCNA1P78396 465 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 KLRC3Q07444 240 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 KMT5BQ4FZB7 885 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 CENPQQ7L2Z9 268 aaPredicted RBP13.27□□□□□ -0.29
SMAD4-211ENST00000590499 PLEKHH3Q7Z736 793 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 LRRC47Q8N1G4 583 aaKnown RBP13.27□□□□□ -0.29
SMAD4-211ENST00000590499 STAG1Q8WVM7 1258 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 SOCS4Q8WXH5 440 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 NUP88Q99567 741 aaPredicted RBP13.27□□□□□ -0.29
SMAD4-211ENST00000590499 DSCC1Q9BVC3 393 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 AAASQ9NRG9 546 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 FBXO28Q9NVF7 368 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 PPP1R9AQ9ULJ8 1098 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 RAD50Q92878 1312 aa13.27□□□□□ -0.29
SMAD4-211ENST00000590499 TSPY2A6NKD2 308 aa13.26□□□□□ -0.29
SMAD4-211ENST00000590499 NMT2O60551 498 aa13.26□□□□□ -0.29
SMAD4-211ENST00000590499 INHAP05111 366 aa13.26□□□□□ -0.29
SMAD4-211ENST00000590499 PCP11498 1178 aaKnown RBP13.26□□□□□ -0.29
SMAD4-211ENST00000590499 XRCC5P13010 732 aaKnown RBP13.26□□□□□ -0.29
SMAD4-211ENST00000590499 CHMLP26374 656 aa13.26□□□□□ -0.29
SMAD4-211ENST00000590499 SHCBP1Q8NEM2 672 aa13.26□□□□□ -0.29
SMAD4-211ENST00000590499 REPS2Q8NFH8 660 aa13.26□□□□□ -0.29
SMAD4-211ENST00000590499 NUDT12Q9BQG2 462 aa13.26□□□□□ -0.29
SMAD4-211ENST00000590499 MOV10L1Q9BXT6 1211 aaKnown RBP13.26□□□□□ -0.29
SMAD4-211ENST00000590499 SPATC1LQ9H0A9 340 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms