RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 MAFAQ8NHW3 353 aaPredicted RBP16.66■□□□□ 0.26
VMP1-209ENST00000588915 CHURC1Q8WUH1 139 aa16.66■□□□□ 0.26
VMP1-209ENST00000588915 KIFC2Q96AC6 838 aa16.66■□□□□ 0.26
VMP1-209ENST00000588915 RAVER2Q9HCJ3 691 aaKnown RBP16.66■□□□□ 0.26
VMP1-209ENST00000588915 TTC41PQ6P2S7 1318 aa16.66■□□□□ 0.26
VMP1-209ENST00000588915 PLIN4Q96Q06 1357 aa16.65■□□□□ 0.26
VMP1-209ENST00000588915 ERC2O15083 957 aa16.65■□□□□ 0.26
VMP1-209ENST00000588915 PLA2G6O60733 806 aa16.65■□□□□ 0.26
VMP1-209ENST00000588915 TSPY3P0CV98 308 aa16.65■□□□□ 0.26
VMP1-209ENST00000588915 TSPY8P0CW00 308 aa16.65■□□□□ 0.26
VMP1-209ENST00000588915 BMP3P12645 472 aa16.65■□□□□ 0.26
VMP1-209ENST00000588915 SLFN13Q68D06 897 aa16.65■□□□□ 0.26
VMP1-209ENST00000588915 FAM160B2Q86V87 743 aa16.65■□□□□ 0.26
VMP1-209ENST00000588915 LENG1Q96BZ8 264 aaPredicted RBP16.65■□□□□ 0.26
VMP1-209ENST00000588915 TBX21Q9UL17 535 aa16.65■□□□□ 0.26
VMP1-209ENST00000588915 A0A0U1RQG5 324 aaPredicted RBP16.64■□□□□ 0.25
VMP1-209ENST00000588915 M0R2C6 588 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 ARVCFO00192 962 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 PRDM1O75626 825 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 ASGR1P07306 291 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 C6orf222P0C671 652 aaPredicted RBP16.64■□□□□ 0.25
VMP1-209ENST00000588915 SLC4A3P48751 1232 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 STAT2P52630 851 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 PPIGQ13427 754 aaKnown RBP eCLIP16.64■□□□□ 0.25
VMP1-209ENST00000588915 TKFCQ3LXA3 575 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 CCDC144BQ3MJ40 725 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 ARMCX2Q7L311 632 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 MYLIPQ8WY64 445 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 GMCL1Q96IK5 515 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 FGD4Q96M96 766 aa16.64■□□□□ 0.25
VMP1-209ENST00000588915 MYH4Q9Y623 1939 aa16.63■□□□□ 0.25
VMP1-209ENST00000588915 GNASQ5JWF2 1037 aa16.63■□□□□ 0.25
VMP1-209ENST00000588915 CCDC144CPQ8IYA2 1237 aa16.63■□□□□ 0.25
VMP1-209ENST00000588915 LRRC47Q8N1G4 583 aaKnown RBP16.63■□□□□ 0.25
VMP1-209ENST00000588915 FAM133AQ8N9E0 248 aa16.63■□□□□ 0.25
VMP1-209ENST00000588915 STAG1Q8WVM7 1258 aa16.63■□□□□ 0.25
VMP1-209ENST00000588915 SEZ6LQ9BYH1 1024 aa16.63■□□□□ 0.25
VMP1-209ENST00000588915 KATNBL1Q9H079 304 aa16.63■□□□□ 0.25
VMP1-209ENST00000588915 ACAD9Q9H845 621 aa16.63■□□□□ 0.25
VMP1-209ENST00000588915 MYADML2A6NDP7 307 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 ASB14A6NK59 587 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 TMEM232C9JQI7 657 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 TLR3O15455 904 aaKnown RBP16.62■□□□□ 0.25
VMP1-209ENST00000588915 CABYRO75952 493 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 FOSL2P15408 326 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 TFAP4Q01664 338 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 PPARAQ07869 468 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 ZMYM1Q5SVZ6 1142 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 CCDC129Q6ZRS4 1044 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 TMEM199Q8N511 208 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 VTI1AQ96AJ9 217 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 NAPBQ9H115 298 aa16.62■□□□□ 0.25
VMP1-209ENST00000588915 ADCY6O43306 1168 aa16.61■□□□□ 0.25
VMP1-209ENST00000588915 DNAJB2P25686 324 aa16.61■□□□□ 0.25
VMP1-209ENST00000588915 SLC1A4P43007 532 aa16.61■□□□□ 0.25
VMP1-209ENST00000588915 RASIP1Q5U651 963 aa16.61■□□□□ 0.25
VMP1-209ENST00000588915 SYMPKQ92797 1274 aaKnown RBP16.61■□□□□ 0.25
VMP1-209ENST00000588915 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.61■□□□□ 0.25
VMP1-209ENST00000588915 CTAGE5O15320 804 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 TNFAIP2Q03169 654 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 TMEM240Q5SV17 173 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 TSHZ3Q63HK5 1081 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 RCSD1Q6JBY9 416 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 FAM126BQ8IXS8 530 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 SLC43A3Q8NBI5 491 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 PI4K2BQ8TCG2 481 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 SEC62Q99442 399 aaKnown RBP16.6■□□□□ 0.25
VMP1-209ENST00000588915 Q9Y3F1 56 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 ZNF536O15090 1300 aa16.6■□□□□ 0.25
VMP1-209ENST00000588915 CD4P01730 458 aa16.59■□□□□ 0.25
VMP1-209ENST00000588915 CNTN2Q02246 1040 aa16.59■□□□□ 0.25
VMP1-209ENST00000588915 GRIN2CQ14957 1233 aa16.59■□□□□ 0.25
VMP1-209ENST00000588915 PSRC1Q6PGN9 363 aaPredicted RBP16.59■□□□□ 0.25
VMP1-209ENST00000588915 C16orf59Q7L2K0 433 aa16.59■□□□□ 0.25
VMP1-209ENST00000588915 TRERF1Q96PN7 1200 aa16.59■□□□□ 0.25
VMP1-209ENST00000588915 FSD1Q9BTV5 496 aa16.59■□□□□ 0.25
VMP1-209ENST00000588915 ZNF576Q9H609 170 aa16.59■□□□□ 0.25
VMP1-209ENST00000588915 A1CFQ9NQ94 594 aaKnown RBP16.59■□□□□ 0.25
VMP1-209ENST00000588915 RNF146Q9NTX7 359 aa16.59■□□□□ 0.25
VMP1-209ENST00000588915 GNEQ9Y223 722 aaKnown RBP16.59■□□□□ 0.25
VMP1-209ENST00000588915 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.59■□□□□ 0.25
VMP1-209ENST00000588915 CDH23Q9H251 3354 aa16.58■□□□□ 0.25
VMP1-209ENST00000588915 SOWAHBA6NEL2 793 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 ZEB2O60315 1214 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 MCCP23508 829 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 NOVP48745 357 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 IRX5P78411 483 aaPredicted RBP16.58■□□□□ 0.24
VMP1-209ENST00000588915 IQSEC1Q6DN90 963 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 TIFAQ96CG3 184 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 AGBL1Q96MI9 1066 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 HOMER2Q9NSB8 354 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 ANAPC4Q9UJX5 808 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 STX8Q9UNK0 236 aa16.58■□□□□ 0.24
VMP1-209ENST00000588915 MCM3APO60318 1980 aa16.57■□□□□ 0.24
VMP1-209ENST00000588915 LOC102724159A0A0B4J2E5 919 aa16.57■□□□□ 0.24
VMP1-209ENST00000588915 TSPY2A6NKD2 308 aa16.57■□□□□ 0.24
VMP1-209ENST00000588915 CSF2RAP15509 400 aa16.57■□□□□ 0.24
VMP1-209ENST00000588915 IKQ13123 557 aaPredicted RBP16.57■□□□□ 0.24
VMP1-209ENST00000588915 PWP2Q15269 919 aaKnown RBP16.57■□□□□ 0.24
VMP1-209ENST00000588915 TICAM2Q86XR7 235 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms