RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 UPF3AQ9H1J1 476 aaKnown RBP17.26■□□□□ 0.35
SDF2-202ENST00000585428 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.26■□□□□ 0.35
SDF2-202ENST00000585428 FBXO40Q9UH90 709 aa17.26■□□□□ 0.35
SDF2-202ENST00000585428 ZHX1Q9UKY1 873 aaPredicted RBP17.26■□□□□ 0.35
SDF2-202ENST00000585428 TBX21Q9UL17 535 aa17.26■□□□□ 0.35
SDF2-202ENST00000585428 ASGR1P07306 291 aa17.25■□□□□ 0.35
SDF2-202ENST00000585428 FDX1P10109 184 aa17.25■□□□□ 0.35
SDF2-202ENST00000585428 TDO2P48775 406 aa17.25■□□□□ 0.35
SDF2-202ENST00000585428 MFSD5Q6N075 450 aa17.25■□□□□ 0.35
SDF2-202ENST00000585428 PCSK9Q8NBP7 692 aaKnown RBP17.25■□□□□ 0.35
SDF2-202ENST00000585428 GPATCH3Q96I76 525 aa17.25■□□□□ 0.35
SDF2-202ENST00000585428 KATNBL1Q9H079 304 aa17.25■□□□□ 0.35
SDF2-202ENST00000585428 CTDP1Q9Y5B0 961 aaPredicted RBP17.25■□□□□ 0.35
SDF2-202ENST00000585428 U3KPZ7 1027 aaPredicted RBP17.25■□□□□ 0.35
SDF2-202ENST00000585428 COL11A1P12107 1806 aaPredicted RBP17.25■□□□□ 0.35
SDF2-202ENST00000585428 GREB1LQ9C091 1923 aaPredicted RBP17.24■□□□□ 0.35
SDF2-202ENST00000585428 CTAGE5O15320 804 aa17.24■□□□□ 0.35
SDF2-202ENST00000585428 ATXN8OSP0DMR3 200 aa17.24■□□□□ 0.35
SDF2-202ENST00000585428 BMP3P12645 472 aa17.24■□□□□ 0.35
SDF2-202ENST00000585428 CNTN2Q02246 1040 aa17.24■□□□□ 0.35
SDF2-202ENST00000585428 GNASQ5JWF2 1037 aa17.24■□□□□ 0.35
SDF2-202ENST00000585428 SLFN13Q68D06 897 aa17.24■□□□□ 0.35
SDF2-202ENST00000585428 ARMCX2Q7L311 632 aa17.24■□□□□ 0.35
SDF2-202ENST00000585428 CCDC144CPQ8IYA2 1237 aa17.24■□□□□ 0.35
SDF2-202ENST00000585428 GLT1D1Q96MS3 346 aa17.24■□□□□ 0.35
SDF2-202ENST00000585428 SEC62Q99442 399 aaKnown RBP17.24■□□□□ 0.35
SDF2-202ENST00000585428 TMEM232C9JQI7 657 aa17.23■□□□□ 0.35
SDF2-202ENST00000585428 ARVCFO00192 962 aa17.23■□□□□ 0.35
SDF2-202ENST00000585428 C6orf222P0C671 652 aaPredicted RBP17.23■□□□□ 0.35
SDF2-202ENST00000585428 TFAP4Q01664 338 aa17.23■□□□□ 0.35
SDF2-202ENST00000585428 FAM133AQ8N9E0 248 aa17.23■□□□□ 0.35
SDF2-202ENST00000585428 GMCL1Q96IK5 515 aa17.23■□□□□ 0.35
SDF2-202ENST00000585428 ZNF536O15090 1300 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 MROH7Q68CQ1 1323 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 PLA2G6O60733 806 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 TSPY3P0CV98 308 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 TSPY8P0CW00 308 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 PDE4BQ07343 736 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 GRIN2CQ14957 1233 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 LRRFIP1Q32MZ4 808 aaKnown RBP17.22■□□□□ 0.35
SDF2-202ENST00000585428 RASIP1Q5U651 963 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 LRRC47Q8N1G4 583 aaKnown RBP17.22■□□□□ 0.35
SDF2-202ENST00000585428 PI4K2BQ8TCG2 481 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 CHURC1Q8WUH1 139 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 STAG1Q8WVM7 1258 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 AGBL1Q96MI9 1066 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.22■□□□□ 0.35
SDF2-202ENST00000585428 NACAP1Q9BZK3 213 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 SPC25Q9HBM1 224 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 VCANP13611 3396 aa17.22■□□□□ 0.35
SDF2-202ENST00000585428 TTC41PQ6P2S7 1318 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 MYH8P13535 1937 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 PLIN4Q96Q06 1357 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 SOWAHBA6NEL2 793 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 CD4P01730 458 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 FOSL2P15408 326 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 DNAJB2P25686 324 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 PPARAQ07869 468 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 TMEM240Q5SV17 173 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 ZMYM1Q5SVZ6 1142 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 FAM160B2Q86V87 743 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 FAM126BQ8IXS8 530 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 SLC43A3Q8NBI5 491 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 VTI1AQ96AJ9 217 aa17.21■□□□□ 0.35
SDF2-202ENST00000585428 GNEQ9Y223 722 aaKnown RBP17.21■□□□□ 0.35
SDF2-202ENST00000585428 CDH23Q9H251 3354 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 A0A0U1RQG5 324 aaPredicted RBP17.2■□□□□ 0.34
SDF2-202ENST00000585428 FOXP2O15409 715 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 MCCP23508 829 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 STAT2P52630 851 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 RCSD1Q6JBY9 416 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 ZNF576Q9H609 170 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 ACAD9Q9H845 621 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 A1CFQ9NQ94 594 aaKnown RBP17.2■□□□□ 0.34
SDF2-202ENST00000585428 IL17RBQ9NRM6 502 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 HOMER2Q9NSB8 354 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 PLXNA1Q9UIW2 1896 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 ASTN1O14525 1302 aa17.2■□□□□ 0.34
SDF2-202ENST00000585428 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.19■□□□□ 0.34
SDF2-202ENST00000585428 ERC2O15083 957 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 SLC3A2P08195 630 aaKnown RBP17.19■□□□□ 0.34
SDF2-202ENST00000585428 CSF2RAP15509 400 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 SLC1A4P43007 532 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 NOVP48745 357 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 TNFAIP2Q03169 654 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 PPIGQ13427 754 aaKnown RBP eCLIP17.19■□□□□ 0.34
SDF2-202ENST00000585428 TKFCQ3LXA3 575 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 TMEM199Q8N511 208 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 NAPBQ9H115 298 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 INCENPQ9NQS7 918 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.19■□□□□ 0.34
SDF2-202ENST00000585428 PCDHB15Q9Y5E8 787 aa17.19■□□□□ 0.34
SDF2-202ENST00000585428 ASB14A6NK59 587 aa17.18■□□□□ 0.34
SDF2-202ENST00000585428 BEX3Q00994 111 aa17.18■□□□□ 0.34
SDF2-202ENST00000585428 IQSEC1Q6DN90 963 aa17.18■□□□□ 0.34
SDF2-202ENST00000585428 ZNF365Q70YC5 407 aa17.18■□□□□ 0.34
SDF2-202ENST00000585428 OTUD7AQ8TE49 926 aaPredicted RBP17.18■□□□□ 0.34
SDF2-202ENST00000585428 TRERF1Q96PN7 1200 aa17.18■□□□□ 0.34
SDF2-202ENST00000585428 RNF146Q9NTX7 359 aa17.18■□□□□ 0.34
SDF2-202ENST00000585428 GRIN2DO15399 1336 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms