RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 TRERF1Q96PN7 1200 aa14.54□□□□□ -0.08
SS18-225ENST00000585121 SENP6Q9GZR1 1112 aaPredicted RBP14.54□□□□□ -0.08
SS18-225ENST00000585121 KAT14Q9H8E8 782 aa14.54□□□□□ -0.08
SS18-225ENST00000585121 GPCPD1Q9NPB8 672 aa14.54□□□□□ -0.08
SS18-225ENST00000585121 RNF146Q9NTX7 359 aa14.54□□□□□ -0.08
SS18-225ENST00000585121 PNMA2Q9UL42 364 aa14.54□□□□□ -0.08
SS18-225ENST00000585121 PARP14Q460N5 1801 aa14.54□□□□□ -0.08
SS18-225ENST00000585121 SYNGAP1Q96PV0 1343 aa14.54□□□□□ -0.08
SS18-225ENST00000585121 COL11A1P12107 1806 aaPredicted RBP14.53□□□□□ -0.08
SS18-225ENST00000585121 DNAJC25-GNG10A0A024R161 153 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 COL6A1P12109 1028 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 TRDNQ13061 729 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 ANO1Q5XXA6 986 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 BTNL9Q6UXG8 535 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 CHRDL2Q6WN34 429 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 ZKSCAN3Q9BRR0 538 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 UBAC1Q9BSL1 405 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 CCPG1Q9ULG6 757 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 COLQQ9Y215 455 aaPredicted RBP14.53□□□□□ -0.08
SS18-225ENST00000585121 PFASO15067 1338 aa14.53□□□□□ -0.08
SS18-225ENST00000585121 FRMPD2Q68DX3 1309 aaPredicted RBP14.53□□□□□ -0.08
SS18-225ENST00000585121 B4E1Z4 1266 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 ICAM1P05362 532 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 PDHBP11177 359 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 AKR1A1P14550 325 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 SLC16A2P36021 539 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 SNAP25P60880 206 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 GPATCH4Q5T3I0 446 aaKnown RBP14.52□□□□□ -0.08
SS18-225ENST00000585121 GJC2Q5T442 439 aaPredicted RBP14.52□□□□□ -0.08
SS18-225ENST00000585121 TTBK2Q6IQ55 1244 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 MAMDC4Q6UXC1 1216 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 RASGRP2Q7LDG7 609 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 ZSCAN10Q96SZ4 725 aaPredicted RBP14.52□□□□□ -0.08
SS18-225ENST00000585121 RANBP17Q9H2T7 1088 aaKnown RBP14.52□□□□□ -0.08
SS18-225ENST00000585121 FAM184BQ9ULE4 1060 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 U3KPZ7 1027 aaPredicted RBP14.52□□□□□ -0.08
SS18-225ENST00000585121 ZNF536O15090 1300 aa14.52□□□□□ -0.08
SS18-225ENST00000585121 ZNF543Q08ER8 600 aa14.51□□□□□ -0.09
SS18-225ENST00000585121 CENPQQ7L2Z9 268 aaPredicted RBP14.51□□□□□ -0.09
SS18-225ENST00000585121 RNF180Q86T96 592 aa14.51□□□□□ -0.09
SS18-225ENST00000585121 PNMA1Q8ND90 353 aa14.51□□□□□ -0.09
SS18-225ENST00000585121 XPNPEP3Q9NQH7 507 aa14.51□□□□□ -0.09
SS18-225ENST00000585121 ZSWIM5Q9P217 1185 aa14.51□□□□□ -0.09
SS18-225ENST00000585121 ZHX1Q9UKY1 873 aaPredicted RBP14.51□□□□□ -0.09
SS18-225ENST00000585121 ASB14A6NK59 587 aa14.51□□□□□ -0.09
SS18-225ENST00000585121 ZNF865P0CJ78 1059 aaPredicted RBP14.51□□□□□ -0.09
SS18-225ENST00000585121 TAL1P17542 331 aaPredicted RBP14.51□□□□□ -0.09
SS18-225ENST00000585121 KIAA1211Q6ZU35 1233 aa14.51□□□□□ -0.09
SS18-225ENST00000585121 ANKS1AQ92625 1134 aa14.51□□□□□ -0.09
SS18-225ENST00000585121 ABHD16BQ9H3Z7 469 aa14.51□□□□□ -0.09
SS18-225ENST00000585121 A1CFQ9NQ94 594 aaKnown RBP14.51□□□□□ -0.09
SS18-225ENST00000585121 SGSM2O43147 1006 aa14.5□□□□□ -0.09
SS18-225ENST00000585121 SNHG28P0DPA3 235 aa14.5□□□□□ -0.09
SS18-225ENST00000585121 ATN1P54259 1190 aaPredicted RBP14.5□□□□□ -0.09
SS18-225ENST00000585121 ACVR2BQ13705 512 aa14.5□□□□□ -0.09
SS18-225ENST00000585121 LRRC41Q15345 812 aa14.5□□□□□ -0.09
SS18-225ENST00000585121 LRRC26Q2I0M4 334 aa14.5□□□□□ -0.09
SS18-225ENST00000585121 NSMFQ6X4W1 530 aa14.5□□□□□ -0.09
SS18-225ENST00000585121 IL25Q9H293 177 aa14.5□□□□□ -0.09
SS18-225ENST00000585121 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.5□□□□□ -0.09
SS18-225ENST00000585121 ZMYND8Q9ULU4 1186 aaPredicted RBP14.5□□□□□ -0.09
SS18-225ENST00000585121 ZNFX1Q9P2E3 1918 aaKnown RBP14.49□□□□□ -0.09
SS18-225ENST00000585121 TNKSO95271 1327 aa14.49□□□□□ -0.09
SS18-225ENST00000585121 SLC34A2O95436 690 aa14.49□□□□□ -0.09
SS18-225ENST00000585121 SNAI1O95863 264 aaPredicted RBP14.49□□□□□ -0.09
SS18-225ENST00000585121 CNTN2Q02246 1040 aa14.49□□□□□ -0.09
SS18-225ENST00000585121 MUM1L1Q5H9M0 696 aa14.49□□□□□ -0.09
SS18-225ENST00000585121 IFIT1BQ5T764 474 aaKnown RBP14.49□□□□□ -0.09
SS18-225ENST00000585121 ARMCX2Q7L311 632 aa14.49□□□□□ -0.09
SS18-225ENST00000585121 RALYLQ86SE5 291 aaKnown RBP14.49□□□□□ -0.09
SS18-225ENST00000585121 ENAHQ8N8S7 591 aaPredicted RBP14.49□□□□□ -0.09
SS18-225ENST00000585121 FAM133AQ8N9E0 248 aa14.49□□□□□ -0.09
SS18-225ENST00000585121 SPC25Q9HBM1 224 aa14.49□□□□□ -0.09
SS18-225ENST00000585121 ERICH2A1L162 156 aa14.48□□□□□ -0.09
SS18-225ENST00000585121 PARP1P09874 1014 aaKnown RBP14.48□□□□□ -0.09
SS18-225ENST00000585121 GOLGA8HP0CJ92 632 aa14.48□□□□□ -0.09
SS18-225ENST00000585121 ADCYAP1R1P41586 468 aa14.48□□□□□ -0.09
SS18-225ENST00000585121 PTH1RQ03431 593 aa14.48□□□□□ -0.09
SS18-225ENST00000585121 ASPRV1Q53RT3 343 aa14.48□□□□□ -0.09
SS18-225ENST00000585121 CCDC144CPQ8IYA2 1237 aa14.48□□□□□ -0.09
SS18-225ENST00000585121 CYP39A1Q9NYL5 469 aa14.48□□□□□ -0.09
SS18-225ENST00000585121 RBM27Q9P2N5 1060 aaKnown RBP14.48□□□□□ -0.09
SS18-225ENST00000585121 ADD3Q9UEY8 706 aaKnown RBP14.48□□□□□ -0.09
SS18-225ENST00000585121 PRKAG2Q9UGJ0 569 aa14.48□□□□□ -0.09
SS18-225ENST00000585121 DHX16O60231 1041 aaKnown RBP14.47□□□□□ -0.09
SS18-225ENST00000585121 PGK1P00558 417 aa14.47□□□□□ -0.09
SS18-225ENST00000585121 SYN1P17600 705 aa14.47□□□□□ -0.09
SS18-225ENST00000585121 SART3Q15020 963 aaKnown RBP14.47□□□□□ -0.09
SS18-225ENST00000585121 WDR19Q8NEZ3 1342 aa14.47□□□□□ -0.09
SS18-225ENST00000585121 PTPDC1A2A3K4 754 aa14.46□□□□□ -0.09
SS18-225ENST00000585121 SOWAHBA6NEL2 793 aa14.46□□□□□ -0.09
SS18-225ENST00000585121 DUSP11O75319 330 aaKnown RBP14.46□□□□□ -0.09
SS18-225ENST00000585121 CYP21A2P08686 494 aa14.46□□□□□ -0.09
SS18-225ENST00000585121 RTP1P59025 263 aa14.46□□□□□ -0.09
SS18-225ENST00000585121 SLC39A5Q6ZMH5 540 aa14.46□□□□□ -0.09
SS18-225ENST00000585121 NOL8Q76FK4 1167 aaKnown RBP14.46□□□□□ -0.09
SS18-225ENST00000585121 NCOA7Q8NI08 942 aa14.46□□□□□ -0.09
SS18-225ENST00000585121 MAP4K1Q92918 833 aa14.46□□□□□ -0.09
SS18-225ENST00000585121 FERMT2Q96AC1 680 aa14.46□□□□□ -0.09
SS18-225ENST00000585121 FGD4Q96M96 766 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms