RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.42□□□□□ -0.42
SS18-221ENST00000582448 OXCT2Q9BYC2 517 aaPredicted RBP12.42□□□□□ -0.42
SS18-221ENST00000582448 MYH3P11055 1940 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 H0YGN5 161 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 KHNYNO15037 678 aaKnown RBP12.41□□□□□ -0.42
SS18-221ENST00000582448 SRGAP3O43295 1099 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 RAB11FIP3O75154 756 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 NBPF7P0C2Y1 421 aaPredicted RBP12.41□□□□□ -0.42
SS18-221ENST00000582448 BMP4P12644 408 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 HIBADHP31937 336 aaKnown RBP12.41□□□□□ -0.42
SS18-221ENST00000582448 CRKP46108 304 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 TNNI2P48788 182 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 GSK3AP49840 483 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 CHAF1AQ13111 956 aaPredicted RBP12.41□□□□□ -0.42
SS18-221ENST00000582448 EPHA10Q5JZY3 1008 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 LRRC69Q6ZNQ3 347 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 DPF3Q92784 378 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 HINFPQ9BQA5 517 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 LRRCC1Q9C099 1032 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 PHACTR1Q9C0D0 580 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 ARHGAP39Q9C0H5 1083 aa12.41□□□□□ -0.42
SS18-221ENST00000582448 ZNF646O15015 1829 aaPredicted RBP12.41□□□□□ -0.42
SS18-221ENST00000582448 KIAA0100Q14667 2235 aaKnown RBP12.41□□□□□ -0.42
SS18-221ENST00000582448 FRAT2O75474 233 aaPredicted RBP12.4□□□□□ -0.42
SS18-221ENST00000582448 CACNB3P54284 484 aa12.4□□□□□ -0.42
SS18-221ENST00000582448 OS9Q13438 667 aaPredicted RBP12.4□□□□□ -0.42
SS18-221ENST00000582448 VPS37DQ86XT2 251 aa12.4□□□□□ -0.42
SS18-221ENST00000582448 TDRD7Q8NHU6 1098 aaKnown RBP12.4□□□□□ -0.42
SS18-221ENST00000582448 SSH3Q8TE77 659 aa12.4□□□□□ -0.42
SS18-221ENST00000582448 TEPSINQ96N21 525 aa12.4□□□□□ -0.42
SS18-221ENST00000582448 SERPINA10Q9UK55 444 aa12.4□□□□□ -0.42
SS18-221ENST00000582448 UTYO14607 1347 aa12.39□□□□□ -0.43
SS18-221ENST00000582448 FAM205AQ6ZU69 1335 aa12.39□□□□□ -0.43
SS18-221ENST00000582448 CENPFP49454 3210 aa12.39□□□□□ -0.43
SS18-221ENST00000582448 FAM157BP0CG42 384 aa12.39□□□□□ -0.43
SS18-221ENST00000582448 CD33P20138 364 aa12.39□□□□□ -0.43
SS18-221ENST00000582448 MTX1Q13505 466 aa12.39□□□□□ -0.43
SS18-221ENST00000582448 GRIK5Q16478 980 aa12.39□□□□□ -0.43
SS18-221ENST00000582448 SAMD5Q5TGI4 173 aa12.39□□□□□ -0.43
SS18-221ENST00000582448 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.39□□□□□ -0.43
SS18-221ENST00000582448 RHPN1Q8TCX5 695 aa12.39□□□□□ -0.43
SS18-221ENST00000582448 C2orf49Q9BVC5 232 aaPredicted RBP12.39□□□□□ -0.43
SS18-221ENST00000582448 PUS3Q9BZE2 481 aaKnown RBP12.39□□□□□ -0.43
SS18-221ENST00000582448 PNMA6EA0A0J9YXQ4 647 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 BTBD19C9JJ37 291 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 OIP5O43482 229 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 TLR2O60603 784 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 SURF6O75683 361 aaKnown RBP12.38□□□□□ -0.43
SS18-221ENST00000582448 CETPP11597 493 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 UBE4AQ14139 1066 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 BMP2KLQ5H9B9 411 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 C1orf53Q5VUE5 145 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 ERC1Q8IUD2 1116 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 ZKSCAN4Q969J2 545 aaPredicted RBP12.38□□□□□ -0.43
SS18-221ENST00000582448 FAM84BQ96KN1 310 aaPredicted RBP12.38□□□□□ -0.43
SS18-221ENST00000582448 WRNIP1Q96S55 665 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 BCL11AQ9H165 835 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 EXOC6BQ9Y2D4 811 aa12.38□□□□□ -0.43
SS18-221ENST00000582448 EFSO43281 561 aa12.37□□□□□ -0.43
SS18-221ENST00000582448 LACTBP83111 547 aaPredicted RBP12.37□□□□□ -0.43
SS18-221ENST00000582448 KCNMA1Q12791 1236 aa12.37□□□□□ -0.43
SS18-221ENST00000582448 C8orf34Q49A92 452 aa12.37□□□□□ -0.43
SS18-221ENST00000582448 MIGA2Q7L4E1 593 aa12.37□□□□□ -0.43
SS18-221ENST00000582448 STAG2Q8N3U4 1231 aa12.37□□□□□ -0.43
SS18-221ENST00000582448 HSH2DQ96JZ2 352 aa12.37□□□□□ -0.43
SS18-221ENST00000582448 TMOD2Q9NZR1 351 aa12.37□□□□□ -0.43
SS18-221ENST00000582448 BIN2Q9UBW5 565 aaPredicted RBP12.37□□□□□ -0.43
SS18-221ENST00000582448 CPA4Q9UI42 421 aa12.37□□□□□ -0.43
SS18-221ENST00000582448 HTTP42858 3142 aa12.37□□□□□ -0.43
SS18-221ENST00000582448 PSMC4P43686 418 aa12.36□□□□□ -0.43
SS18-221ENST00000582448 MARSP56192 900 aaKnown RBP12.36□□□□□ -0.43
SS18-221ENST00000582448 SNAPC2Q13487 334 aa12.36□□□□□ -0.43
SS18-221ENST00000582448 CASC1Q6TDU7 716 aa12.36□□□□□ -0.43
SS18-221ENST00000582448 ERO1BQ86YB8 467 aa12.36□□□□□ -0.43
SS18-221ENST00000582448 KIF1BPQ96EK5 621 aa12.36□□□□□ -0.43
SS18-221ENST00000582448 ENAMQ9NRM1 1142 aa12.36□□□□□ -0.43
SS18-221ENST00000582448 GPC6Q9Y625 555 aaPredicted RBP12.36□□□□□ -0.43
SS18-221ENST00000582448 SNCAIPQ9Y6H5 919 aa12.36□□□□□ -0.43
SS18-221ENST00000582448 BRCA2P51587 3418 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 SHISA8B8ZZ34 492 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 G3BP1Q13283 466 aaKnown RBP eCLIP12.35□□□□□ -0.43
SS18-221ENST00000582448 GRIN2CQ14957 1233 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 CAVIN4Q5BKX8 364 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 ALDH16A1Q8IZ83 802 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 ZNF280CQ8ND82 737 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 RAET1EQ8TD07 263 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 TEKT1Q969V4 418 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 SUCLG2Q96I99 432 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 BICC1Q9H694 974 aaKnown RBP12.35□□□□□ -0.43
SS18-221ENST00000582448 KLF15Q9UIH9 416 aa12.35□□□□□ -0.43
SS18-221ENST00000582448 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.34□□□□□ -0.43
SS18-221ENST00000582448 HOXD10P28358 340 aa12.34□□□□□ -0.43
SS18-221ENST00000582448 METTL24Q5JXM2 366 aa12.34□□□□□ -0.43
SS18-221ENST00000582448 FBXO33Q7Z6M2 555 aa12.34□□□□□ -0.43
SS18-221ENST00000582448 GALNT6Q8NCL4 622 aa12.34□□□□□ -0.43
SS18-221ENST00000582448 NEDD1Q8NHV4 660 aa12.34□□□□□ -0.43
SS18-221ENST00000582448 GPATCH3Q96I76 525 aa12.34□□□□□ -0.43
SS18-221ENST00000582448 GDF2Q9UK05 429 aaPredicted RBP12.34□□□□□ -0.43
SS18-221ENST00000582448 ECM29Q5VYK3 1845 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 PDHXO00330 501 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms