RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ENDOUP21128 410 aaKnown RBP7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 GDNFP39905 211 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 IRAK1P51617 712 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 AMPD2Q01433 879 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 GRB10Q13322 594 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 SERINC3Q13530 473 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 DPY19L1Q2PZI1 675 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 FCRL3Q96P31 734 aaPredicted RBP7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 LGR4Q9BXB1 951 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 CCDC113Q9H0I3 377 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 AP5S1Q9NUS5 200 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 USP35Q9P2H5 1018 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 MSRB2Q9Y3D2 182 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 PDPK1O15530 556 aa7□□□□□ -1.29
SMCHD1-204ENST00000581226 SLC10A6Q3KNW5 377 aa7□□□□□ -1.29
SMCHD1-204ENST00000581226 RTP2Q5QGT7 225 aa7□□□□□ -1.29
SMCHD1-204ENST00000581226 ST13P5Q8NFI4 369 aaPredicted RBP7□□□□□ -1.29
SMCHD1-204ENST00000581226 C19orf73Q9NVV2 129 aa7□□□□□ -1.29
SMCHD1-204ENST00000581226 EBF1Q9UH73 591 aa7□□□□□ -1.29
SMCHD1-204ENST00000581226 GPR55Q9Y2T6 319 aaPredicted RBP7□□□□□ -1.29
SMCHD1-204ENST00000581226 IFNGR1P15260 489 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 GTF2IRD2BQ6EKJ0 949 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 ATG4DQ86TL0 474 aaPredicted RBP6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 GTF2IRD2Q86UP8 949 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 ZNF227Q86WZ6 799 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 SPPL2CQ8IUH8 684 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 TRIM59Q8IWR1 403 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 OXR1Q8N573 874 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 NAT16Q8N8M0 369 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 PDZD8Q8NEN9 1154 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 LINC01599Q8WXQ3 324 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 FCRL2Q96LA5 508 aaPredicted RBP6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 MRGPRX3Q96LB0 322 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 SRPK1Q96SB4 655 aaKnown RBP6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 MCMBPQ9BTE3 642 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 G6PC3Q9BUM1 346 aa6.99□□□□□ -1.29
SMCHD1-204ENST00000581226 STXBP3O00186 592 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 BIN1O00499 593 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 AURKAO14965 403 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 TBX1O43435 398 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 RAC2P15153 192 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 AFMP43652 599 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 ERVFC1P60507 584 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 RASGRF1Q13972 1273 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 MCTP1Q6DN14 999 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 ANKS4BQ8N8V4 417 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 FLAD1Q8NFF5 587 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 MKL1Q969V6 931 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 MAP6Q96JE9 813 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 DEPDC7Q96QD5 511 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 OSBPL2Q9H1P3 480 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 ERVK13-1Q9NX77 482 aa6.98□□□□□ -1.29
SMCHD1-204ENST00000581226 FITM1A5D6W6 292 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 IQCA1LA6NCM1 817 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 C2orf71A6NGG8 1288 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 USP2O75604 605 aaPredicted RBP6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 HPXP02790 462 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 KIR2DL1P43626 348 aaPredicted RBP6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 KIR2DL2P43627 348 aaPredicted RBP6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 CHRNEQ04844 493 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 MTERF2Q49AM1 385 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 LRP10Q7Z4F1 713 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 BTN2A2Q8WVV5 523 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 HHIPL1Q96JK4 782 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 LNPKQ9C0E8 428 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 CWC22Q9HCG8 908 aaKnown RBP6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 SNTG2Q9NY99 539 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 TNFRSF10DQ9UBN6 386 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 BACE2Q9Y5Z0 518 aa6.97□□□□□ -1.29
SMCHD1-204ENST00000581226 A0A1W2PQU0 124 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 FAM221BA6H8Z2 402 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 FGF10O15520 208 aaPredicted RBP6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 TRHRP34981 398 aaPredicted RBP6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 SEPHS1P49903 392 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 IFRD2Q12894 506 aaPredicted RBP6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 RASA3Q14644 834 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 SLC14A2Q15849 920 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 CCDC144BQ3MJ40 725 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 RCSD1Q6JBY9 416 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 CEP128Q6ZU80 1094 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 SPATC1Q76KD6 591 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 TMEM52Q8NDY8 209 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 MYLIPQ8WY64 445 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 ZNF669Q96BR6 464 aaPredicted RBP6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 SGSM3Q96HU1 749 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 PTCHD1Q96NR3 888 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 NKX2-4Q9H2Z4 354 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 C19orf44Q9H6X5 657 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 ZSWIM4Q9H7M6 989 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 CYP26B1Q9NR63 512 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 PFDN2Q9UHV9 154 aa6.96□□□□□ -1.3
SMCHD1-204ENST00000581226 FADS2P1A8MWK0 482 aa6.95□□□□□ -1.3
SMCHD1-204ENST00000581226 TBC1D8O95759 1140 aa6.95□□□□□ -1.3
SMCHD1-204ENST00000581226 TAL1P17542 331 aaPredicted RBP6.95□□□□□ -1.3
SMCHD1-204ENST00000581226 RTP1P59025 263 aa6.95□□□□□ -1.3
SMCHD1-204ENST00000581226 PPP2R2AP63151 447 aa6.95□□□□□ -1.3
SMCHD1-204ENST00000581226 SCRN1Q12765 414 aa6.95□□□□□ -1.3
SMCHD1-204ENST00000581226 HSP90AA2PQ14568 343 aaPredicted RBP6.95□□□□□ -1.3
SMCHD1-204ENST00000581226 BMS1Q14692 1282 aaKnown RBP6.95□□□□□ -1.3
SMCHD1-204ENST00000581226 NFE2L2Q16236 605 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms