RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 Q3C1V9 767 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 SNRNP48Q6IEG0 339 aaKnown RBP18.01■□□□□ 0.47
SS18-216ENST00000580751 RAB11FIP4Q86YS3 637 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 RIOX2Q8IUF8 465 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 CCDC144CPQ8IYA2 1237 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 ADGRF4Q8IZF3 695 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 CPXCR1Q8N123 301 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 CD99L2Q8TCZ2 262 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 MOV10L1Q9BXT6 1211 aaKnown RBP18.01■□□□□ 0.47
SS18-216ENST00000580751 CPVLQ9H3G5 476 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 CWC22Q9HCG8 908 aaKnown RBP18.01■□□□□ 0.47
SS18-216ENST00000580751 TNPO2O14787 897 aaKnown RBP18■□□□□ 0.47
SS18-216ENST00000580751 ICAM1P05362 532 aa18■□□□□ 0.47
SS18-216ENST00000580751 PSMC4P43686 418 aa18■□□□□ 0.47
SS18-216ENST00000580751 AK2P54819 239 aa18■□□□□ 0.47
SS18-216ENST00000580751 CDC37Q16543 378 aaPredicted RBP18■□□□□ 0.47
SS18-216ENST00000580751 CCDC174Q6PII3 467 aa18■□□□□ 0.47
SS18-216ENST00000580751 TMTC3Q6ZXV5 915 aa18■□□□□ 0.47
SS18-216ENST00000580751 ZNF274Q96GC6 653 aaPredicted RBP18■□□□□ 0.47
SS18-216ENST00000580751 SPZ1Q9BXG8 430 aa18■□□□□ 0.47
SS18-216ENST00000580751 PORCNQ9H237 461 aa18■□□□□ 0.47
SS18-216ENST00000580751 MROH8Q9H579 483 aa18■□□□□ 0.47
SS18-216ENST00000580751 RAVER2Q9HCJ3 691 aaKnown RBP18■□□□□ 0.47
SS18-216ENST00000580751 CASP8AP2Q9UKL3 1982 aa18■□□□□ 0.47
SS18-216ENST00000580751 FMNL1O95466 1100 aaPredicted RBP17.99■□□□□ 0.47
SS18-216ENST00000580751 WDR78Q5VTH9 848 aa17.99■□□□□ 0.47
SS18-216ENST00000580751 COA7Q96BR5 231 aa17.99■□□□□ 0.47
SS18-216ENST00000580751 ARHGAP39Q9C0H5 1083 aa17.99■□□□□ 0.47
SS18-216ENST00000580751 RIOX1Q9H6W3 641 aa17.99■□□□□ 0.47
SS18-216ENST00000580751 JMJD4Q9H9V9 463 aa17.99■□□□□ 0.47
SS18-216ENST00000580751 EFCC1Q9HA90 598 aa17.99■□□□□ 0.47
SS18-216ENST00000580751 HPS5Q9UPZ3 1129 aa17.99■□□□□ 0.47
SS18-216ENST00000580751 MGAMO43451 1857 aa17.99■□□□□ 0.47
SS18-216ENST00000580751 ZNF536O15090 1300 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 PLEKHA8P1O95397 391 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 CD2BP2O95400 341 aaKnown RBP17.98■□□□□ 0.47
SS18-216ENST00000580751 ERCC3P19447 782 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 HOXD10P28358 340 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 PDIA3P30101 505 aaKnown RBP17.98■□□□□ 0.47
SS18-216ENST00000580751 SNAP25P60880 206 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 TKFCQ3LXA3 575 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 NCAPG2Q86XI2 1143 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 MTMR8Q96EF0 704 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 INTS4Q96HW7 963 aaKnown RBP17.98■□□□□ 0.47
SS18-216ENST00000580751 TMX3Q96JJ7 454 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 TRIM47Q96LD4 638 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 VAT1LQ9HCJ6 419 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 FBXO40Q9UH90 709 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 CCPG1Q9ULG6 757 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 IVNS1ABPQ9Y6Y0 642 aa17.98■□□□□ 0.47
SS18-216ENST00000580751 ZBTB5O15062 677 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 CYTH3O43739 400 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 CTGFP29279 349 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 PRMT2P55345 433 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 TRAF1Q13077 416 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 CUL4AQ13619 759 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 QRICH1Q2TAL8 776 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 GPR142Q7Z601 462 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 PLEKHH3Q7Z736 793 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 CTU1Q7Z7A3 348 aaKnown RBP17.97■□□□□ 0.47
SS18-216ENST00000580751 NBPF11Q86T75 865 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 SRBD1Q8N5C6 995 aaKnown RBP17.97■□□□□ 0.47
SS18-216ENST00000580751 CHST13Q8NET6 341 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 RRP36Q96EU6 259 aaKnown RBP17.97■□□□□ 0.47
SS18-216ENST00000580751 AGBL1Q96MI9 1066 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 SEC63Q9UGP8 760 aaKnown RBP17.97■□□□□ 0.47
SS18-216ENST00000580751 TPCN1Q9ULQ1 816 aa17.97■□□□□ 0.47
SS18-216ENST00000580751 ZSWIM8A7E2V4 1837 aa17.96■□□□□ 0.47
SS18-216ENST00000580751 STRNO43815 780 aa17.96■□□□□ 0.47
SS18-216ENST00000580751 ECM2O94769 699 aaPredicted RBP17.96■□□□□ 0.47
SS18-216ENST00000580751 SLC4A3P48751 1232 aa17.96■□□□□ 0.47
SS18-216ENST00000580751 SLC35G1Q2M3R5 365 aa17.96■□□□□ 0.47
SS18-216ENST00000580751 HOMER1Q86YM7 354 aa17.96■□□□□ 0.47
SS18-216ENST00000580751 SOCS4Q8WXH5 440 aa17.96■□□□□ 0.47
SS18-216ENST00000580751 LARP6Q9BRS8 491 aaKnown RBP17.96■□□□□ 0.47
SS18-216ENST00000580751 TRIM17Q9Y577 477 aa17.96■□□□□ 0.47
SS18-216ENST00000580751 PNMA6FA0A0J9YX94 578 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 ALAS1P13196 640 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 CDC27P30260 824 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 CPLX2Q6PUV4 134 aaKnown RBP17.95■□□□□ 0.46
SS18-216ENST00000580751 NOL8Q76FK4 1167 aaKnown RBP17.95■□□□□ 0.46
SS18-216ENST00000580751 OTOP1Q7RTM1 612 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 FBXO11Q86XK2 927 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 ABRAQ8N0Z2 381 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 CMTR1Q8N1G2 835 aaKnown RBP17.95■□□□□ 0.46
SS18-216ENST00000580751 PIGSQ96S52 555 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 AMNQ9BXJ7 453 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 SLKQ9H2G2 1235 aaPredicted RBP17.95■□□□□ 0.46
SS18-216ENST00000580751 ACAD9Q9H845 621 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 RNF146Q9NTX7 359 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 FAM217BQ9NTX9 383 aaPredicted RBP17.95■□□□□ 0.46
SS18-216ENST00000580751 RIPK3Q9Y572 518 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 BAZ2BQ9UIF8 2168 aaKnown RBP17.95■□□□□ 0.46
SS18-216ENST00000580751 ZNF236Q9UL36 1845 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 ABCB11O95342 1321 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 CNTNAP5Q8WYK1 1306 aa17.95■□□□□ 0.46
SS18-216ENST00000580751 MYH6P13533 1939 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 SLC15A5A6NIM6 579 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 CPLX1O14810 134 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 PFKFB2O60825 505 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms