RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 PHIPQ8WWQ0 1821 aa17.56■□□□□ 0.4
SS18-206ENST00000577572 hCG_1642624A0A1W2PR95 340 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 DTNBO60941 627 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 TOMM70O94826 608 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 BAG4O95429 457 aaKnown RBP17.55■□□□□ 0.4
SS18-206ENST00000577572 MRPL12P52815 198 aaKnown RBP17.55■□□□□ 0.4
SS18-206ENST00000577572 GUCY1B3Q02153 619 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 FSTL1Q12841 308 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 CST9Q5W186 159 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 MOB2Q70IA6 237 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 NOSTRINQ8IVI9 506 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 ZNF396Q96N95 335 aaPredicted RBP17.55■□□□□ 0.4
SS18-206ENST00000577572 TANGO6Q9C0B7 1094 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 SLC38A10Q9HBR0 1119 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 SLC45A1Q9Y2W3 748 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 OTOFQ9HC10 1997 aa17.55■□□□□ 0.4
SS18-206ENST00000577572 ATP2A1O14983 1001 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 ZBED4O75132 1171 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 FLOT1O75955 427 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 TRAPPC10P48553 1259 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 GTF2A2P52657 109 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 KRT85P78386 507 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 NPY5RQ15761 445 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 OTUD7BQ6GQQ9 843 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 BLIDQ8IZY5 108 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 MB21D1Q8N884 522 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 KIFC2Q96AC6 838 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 HHIPL1Q96JK4 782 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 SCAND2PQ9GZW5 306 aaPredicted RBP17.54■□□□□ 0.4
SS18-206ENST00000577572 KCNJ14Q9UNX9 436 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 PCDHA1Q9Y5I3 950 aa17.54■□□□□ 0.4
SS18-206ENST00000577572 ABCB11O95342 1321 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 SMCO2A6NFE2 343 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 DDX11L8A8MPP1 907 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 ICAM1P05362 532 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 CETPP11597 493 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 DSG3P32926 999 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 RILPL1Q5EBL4 403 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 LBX2Q6XYB7 198 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 FERMT3Q86UX7 667 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 GTF3C2Q8WUA4 911 aaPredicted RBP17.53■□□□□ 0.4
SS18-206ENST00000577572 PIBF1Q8WXW3 757 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 GPKOWQ92917 476 aaPredicted RBP eCLIP17.53■□□□□ 0.4
SS18-206ENST00000577572 WNK4Q96J92 1243 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 RIC8AQ9NPQ8 531 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 GJB4Q9NTQ9 266 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 AGTPBP1Q9UPW5 1226 aa17.53■□□□□ 0.4
SS18-206ENST00000577572 BTBD18B2RXH4 712 aa17.52■□□□□ 0.4
SS18-206ENST00000577572 M0R2N6 131 aa17.52■□□□□ 0.4
SS18-206ENST00000577572 PPP1R11O60927 126 aaPredicted RBP17.52■□□□□ 0.4
SS18-206ENST00000577572 ADCY7P51828 1080 aa17.52■□□□□ 0.4
SS18-206ENST00000577572 MYSM1Q5VVJ2 828 aa17.52■□□□□ 0.4
SS18-206ENST00000577572 TYW1BQ6NUM6 668 aa17.52■□□□□ 0.4
SS18-206ENST00000577572 CUL5Q93034 780 aa17.52■□□□□ 0.4
SS18-206ENST00000577572 TNFRSF25Q93038 417 aa17.52■□□□□ 0.4
SS18-206ENST00000577572 SHISA4Q96DD7 197 aa17.52■□□□□ 0.4
SS18-206ENST00000577572 FBXO28Q9NVF7 368 aa17.52■□□□□ 0.4
SS18-206ENST00000577572 MAP3K20Q9NYL2 800 aaKnown RBP17.52■□□□□ 0.4
SS18-206ENST00000577572 MRPL11Q9Y3B7 192 aaKnown RBP17.52■□□□□ 0.4
SS18-206ENST00000577572 MORC2Q9Y6X9 1032 aaPredicted RBP17.52■□□□□ 0.4
SS18-206ENST00000577572 MYH6P13533 1939 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 VWA5AO00534 786 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 HUNKP57058 714 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 TKFCQ3LXA3 575 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 FOXD4L5Q5VV16 416 aaPredicted RBP17.51■□□□□ 0.39
SS18-206ENST00000577572 SPRYD7Q5W111 196 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 KRT25Q7Z3Z0 450 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 TMEM87AQ8NBN3 555 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 CNKSR2Q8WXI2 1034 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 FOXD4L4Q8WXT5 416 aaPredicted RBP17.51■□□□□ 0.39
SS18-206ENST00000577572 PSTPIP2Q9H939 334 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 PNMA3Q9UL41 463 aa17.51■□□□□ 0.39
SS18-206ENST00000577572 NOL7Q9UMY1 257 aaKnown RBP17.51■□□□□ 0.39
SS18-206ENST00000577572 CTDP1Q9Y5B0 961 aaPredicted RBP17.51■□□□□ 0.39
SS18-206ENST00000577572 ELP1O95163 1332 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 KIF28PB7ZC32 967 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 PIK3CDO00329 1044 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 BMP15O95972 392 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 FOSP01100 380 aaPredicted RBP17.5■□□□□ 0.39
SS18-206ENST00000577572 OSBPP22059 807 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 MCM4P33991 863 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 FOSBP53539 338 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 GHRHRQ02643 423 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 FMR1Q06787 632 aaKnown RBP eCLIP17.5■□□□□ 0.39
SS18-206ENST00000577572 AP3B2Q13367 1082 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 MOGSQ13724 837 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 SAPCD2Q86UD0 394 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 REXO1Q8N1G1 1221 aaKnown RBP17.5■□□□□ 0.39
SS18-206ENST00000577572 COA7Q96BR5 231 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 ZCCHC17Q9NP64 241 aaKnown RBP17.5■□□□□ 0.39
SS18-206ENST00000577572 POLR3EQ9NVU0 708 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 LOC285556D6RIA3 1793 aa17.5■□□□□ 0.39
SS18-206ENST00000577572 TESPA1A2RU30 521 aaPredicted RBP17.49■□□□□ 0.39
SS18-206ENST00000577572 YEATS4O95619 227 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 INHBEP58166 350 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 DNM1Q05193 864 aaKnown RBP17.49■□□□□ 0.39
SS18-206ENST00000577572 ORC2Q13416 577 aaPredicted RBP17.49■□□□□ 0.39
SS18-206ENST00000577572 GADL1Q6ZQY3 521 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 MCF2L2Q86YR7 1114 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 CCDC102AQ96A19 550 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms